miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23919 5' -62 NC_005262.1 + 19435 0.66 0.410572
Target:  5'- cGCGGCaucuGAagcGCugGGCGuUGGCCuCGAUgcUCa -3'
miRNA:   3'- -UGCCG----CU---CGugCCGC-GCCGG-GCUA--AG- -5'
23919 5' -62 NC_005262.1 + 32843 0.66 0.425776
Target:  5'- uCGGCGAcaagguuucggcccGCAC-GUGCGGCgCCGAgcugUUCg -3'
miRNA:   3'- uGCCGCU--------------CGUGcCGCGCCG-GGCU----AAG- -5'
23919 5' -62 NC_005262.1 + 61164 0.66 0.428494
Target:  5'- gGCGGCGGGCgagcugACGggcGCGCGGCgcuaCGAg-- -3'
miRNA:   3'- -UGCCGCUCG------UGC---CGCGCCGg---GCUaag -5'
23919 5' -62 NC_005262.1 + 61536 0.66 0.428494
Target:  5'- uUGcGCGGGCcgucauCGaCGCGGCCCGAg-- -3'
miRNA:   3'- uGC-CGCUCGu-----GCcGCGCCGGGCUaag -5'
23919 5' -62 NC_005262.1 + 22226 0.66 0.428494
Target:  5'- ---uCGAGUACguguugugGGCGUGGCCCGGaUCg -3'
miRNA:   3'- ugccGCUCGUG--------CCGCGCCGGGCUaAG- -5'
23919 5' -62 NC_005262.1 + 7764 0.66 0.428494
Target:  5'- uGCGGCGGGCccuuGCGGuUGCGGaUCgCGGUg- -3'
miRNA:   3'- -UGCCGCUCG----UGCC-GCGCC-GG-GCUAag -5'
23919 5' -62 NC_005262.1 + 34138 0.66 0.427587
Target:  5'- cUGcGCGGGCGCGG-GCGGCaugccgcucgcugCCGAUg- -3'
miRNA:   3'- uGC-CGCUCGUGCCgCGCCG-------------GGCUAag -5'
23919 5' -62 NC_005262.1 + 8892 0.66 0.410572
Target:  5'- -gGuGCGAGCcgucgaACuGGCGCGGCgCGAUg- -3'
miRNA:   3'- ugC-CGCUCG------UG-CCGCGCCGgGCUAag -5'
23919 5' -62 NC_005262.1 + 56284 0.67 0.367871
Target:  5'- uCGGCGAGCAguCGGCgaagaaccGCGGCUuCGAc-- -3'
miRNA:   3'- uGCCGCUCGU--GCCG--------CGCCGG-GCUaag -5'
23919 5' -62 NC_005262.1 + 7534 0.67 0.376164
Target:  5'- uCGGCGGcGCGuCGGCGCG-CUCGAc-- -3'
miRNA:   3'- uGCCGCU-CGU-GCCGCGCcGGGCUaag -5'
23919 5' -62 NC_005262.1 + 31630 0.67 0.376164
Target:  5'- cGCGGCaAGCcgaccuACGGCGauGCCCGcgUg -3'
miRNA:   3'- -UGCCGcUCG------UGCCGCgcCGGGCuaAg -5'
23919 5' -62 NC_005262.1 + 37271 0.67 0.367871
Target:  5'- aACGGcCGAGCcacguucaACGuGCGCGGCgauCCG-UUCa -3'
miRNA:   3'- -UGCC-GCUCG--------UGC-CGCGCCG---GGCuAAG- -5'
23919 5' -62 NC_005262.1 + 29777 0.67 0.367871
Target:  5'- cCGGCGuAGUgccggACGGCGCGGCaCCc---- -3'
miRNA:   3'- uGCCGC-UCG-----UGCCGCGCCG-GGcuaag -5'
23919 5' -62 NC_005262.1 + 24931 0.67 0.365407
Target:  5'- cAUGGCGGgaugcgcacaugccGCGCGGCGC-GCCCaGcUUCa -3'
miRNA:   3'- -UGCCGCU--------------CGUGCCGCGcCGGG-CuAAG- -5'
23919 5' -62 NC_005262.1 + 40722 0.67 0.359704
Target:  5'- gGCGGCgcugacgcccucGAGCACgGGCgGCGGCgCG-UUCc -3'
miRNA:   3'- -UGCCG------------CUCGUG-CCG-CGCCGgGCuAAG- -5'
23919 5' -62 NC_005262.1 + 4561 0.67 0.359704
Target:  5'- cGCGGCGcaucucgcgccAGCgGCGGCGCuGCUCGGg-- -3'
miRNA:   3'- -UGCCGC-----------UCG-UGCCGCGcCGGGCUaag -5'
23919 5' -62 NC_005262.1 + 16489 0.67 0.351665
Target:  5'- cCGGaCGAGCugGGCGaGGCgCUGGg-- -3'
miRNA:   3'- uGCC-GCUCGugCCGCgCCG-GGCUaag -5'
23919 5' -62 NC_005262.1 + 24345 0.67 0.335973
Target:  5'- uGCGGCucuGCGuCGGCGCG-CCUGAUa- -3'
miRNA:   3'- -UGCCGcu-CGU-GCCGCGCcGGGCUAag -5'
23919 5' -62 NC_005262.1 + 49182 0.67 0.335201
Target:  5'- aGCGGCGcGCACGGCGaugaucucCGGCaugcuggCCGAg-- -3'
miRNA:   3'- -UGCCGCuCGUGCCGC--------GCCG-------GGCUaag -5'
23919 5' -62 NC_005262.1 + 17685 0.67 0.367048
Target:  5'- aGCGGCGAagaaGC-CGGCcguggucGCuGGCCCGAa-- -3'
miRNA:   3'- -UGCCGCU----CGuGCCG-------CG-CCGGGCUaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.