miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23919 5' -62 NC_005262.1 + 53080 0.67 0.359704
Target:  5'- uGCGG-GAGCGcCGGCcgcgugcgcGCGGCCuCGAUc- -3'
miRNA:   3'- -UGCCgCUCGU-GCCG---------CGCCGG-GCUAag -5'
23919 5' -62 NC_005262.1 + 30929 0.67 0.359704
Target:  5'- cGCGGCGAacgcucggcgccGCAC-GUGCGGgCCGAa-- -3'
miRNA:   3'- -UGCCGCU------------CGUGcCGCGCCgGGCUaag -5'
23919 5' -62 NC_005262.1 + 10075 0.67 0.367048
Target:  5'- cGCGuuCGAGCgccACGGCcuucgacGCGGCCgGGUUCu -3'
miRNA:   3'- -UGCc-GCUCG---UGCCG-------CGCCGGgCUAAG- -5'
23919 5' -62 NC_005262.1 + 41380 0.67 0.335973
Target:  5'- cCGGCGAGCA-GGCG-GcGCUCGAUc- -3'
miRNA:   3'- uGCCGCUCGUgCCGCgC-CGGGCUAag -5'
23919 5' -62 NC_005262.1 + 21379 0.67 0.376164
Target:  5'- uGCGGCcGGC-UGGCGCcGCCUGAa-- -3'
miRNA:   3'- -UGCCGcUCGuGCCGCGcCGGGCUaag -5'
23919 5' -62 NC_005262.1 + 17685 0.67 0.367048
Target:  5'- aGCGGCGAagaaGC-CGGCcguggucGCuGGCCCGAa-- -3'
miRNA:   3'- -UGCCGCU----CGuGCCG-------CG-CCGGGCUaag -5'
23919 5' -62 NC_005262.1 + 24931 0.67 0.365407
Target:  5'- cAUGGCGGgaugcgcacaugccGCGCGGCGC-GCCCaGcUUCa -3'
miRNA:   3'- -UGCCGCU--------------CGUGCCGCGcCGGG-CuAAG- -5'
23919 5' -62 NC_005262.1 + 40722 0.67 0.359704
Target:  5'- gGCGGCgcugacgcccucGAGCACgGGCgGCGGCgCG-UUCc -3'
miRNA:   3'- -UGCCG------------CUCGUG-CCG-CGCCGgGCuAAG- -5'
23919 5' -62 NC_005262.1 + 49182 0.67 0.335201
Target:  5'- aGCGGCGcGCACGGCGaugaucucCGGCaugcuggCCGAg-- -3'
miRNA:   3'- -UGCCGCuCGUGCCGC--------GCCG-------GGCUaag -5'
23919 5' -62 NC_005262.1 + 4561 0.67 0.359704
Target:  5'- cGCGGCGcaucucgcgccAGCgGCGGCGCuGCUCGGg-- -3'
miRNA:   3'- -UGCCGC-----------UCG-UGCCGCGcCGGGCUaag -5'
23919 5' -62 NC_005262.1 + 16489 0.67 0.351665
Target:  5'- cCGGaCGAGCugGGCGaGGCgCUGGg-- -3'
miRNA:   3'- uGCC-GCUCGugCCGCgCCG-GGCUaag -5'
23919 5' -62 NC_005262.1 + 24345 0.67 0.335973
Target:  5'- uGCGGCucuGCGuCGGCGCG-CCUGAUa- -3'
miRNA:   3'- -UGCCGcu-CGU-GCCGCGCcGGGCUAag -5'
23919 5' -62 NC_005262.1 + 31091 0.68 0.32832
Target:  5'- -gGGCGAGC----CGCGGCCCGAc-- -3'
miRNA:   3'- ugCCGCUCGugccGCGCCGGGCUaag -5'
23919 5' -62 NC_005262.1 + 41529 0.68 0.32832
Target:  5'- uGCGGgGAcGUAUGGCGaCGGCgUGAUg- -3'
miRNA:   3'- -UGCCgCU-CGUGCCGC-GCCGgGCUAag -5'
23919 5' -62 NC_005262.1 + 28132 0.68 0.313404
Target:  5'- gAC-GUGAGCACGaGCuGCGGCaCCGAg-- -3'
miRNA:   3'- -UGcCGCUCGUGC-CG-CGCCG-GGCUaag -5'
23919 5' -62 NC_005262.1 + 23358 0.68 0.320797
Target:  5'- cCGGCGugaagcGCGCGGCGgcgaaGGCCCGc--- -3'
miRNA:   3'- uGCCGCu-----CGUGCCGCg----CCGGGCuaag -5'
23919 5' -62 NC_005262.1 + 15996 0.68 0.320797
Target:  5'- uCGGCGuGCA--GCGCGGCaCCGAc-- -3'
miRNA:   3'- uGCCGCuCGUgcCGCGCCG-GGCUaag -5'
23919 5' -62 NC_005262.1 + 48481 0.68 0.292003
Target:  5'- cCGcGUGGGCACGG-GCGGCgCGAc-- -3'
miRNA:   3'- uGC-CGCUCGUGCCgCGCCGgGCUaag -5'
23919 5' -62 NC_005262.1 + 42149 0.68 0.299007
Target:  5'- cGCGGCGccgGGCcCGGuCGCGG-CCGAUcgUCu -3'
miRNA:   3'- -UGCCGC---UCGuGCC-GCGCCgGGCUA--AG- -5'
23919 5' -62 NC_005262.1 + 8903 0.68 0.320797
Target:  5'- gACGGUccgcucuuggGuGCGCGGCGaaaaGcGCCCGAUUa -3'
miRNA:   3'- -UGCCG----------CuCGUGCCGCg---C-CGGGCUAAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.