Results 21 - 40 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23919 | 5' | -62 | NC_005262.1 | + | 5182 | 0.72 | 0.160312 |
Target: 5'- gGCGucGCGGGCGCgGGCGCGGCCgGcg-Cg -3' miRNA: 3'- -UGC--CGCUCGUG-CCGCGCCGGgCuaaG- -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 16084 | 0.71 | 0.207114 |
Target: 5'- gGCGGCGAGCcgccgccCGGCGCGGUgCuugGcgUCa -3' miRNA: 3'- -UGCCGCUCGu------GCCGCGCCGgG---CuaAG- -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 29775 | 0.71 | 0.187116 |
Target: 5'- cGCGGC--GCACGaUGCGGCCCGGcgUCa -3' miRNA: 3'- -UGCCGcuCGUGCcGCGCCGGGCUa-AG- -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 51675 | 0.71 | 0.207114 |
Target: 5'- cGCGGCGAucugcucgcgcGCACGGCGgCGcugauugcGCCCGAa-- -3' miRNA: 3'- -UGCCGCU-----------CGUGCCGC-GC--------CGGGCUaag -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 13791 | 0.71 | 0.182389 |
Target: 5'- uCGGUGGGCGcCGGCGCGGCUUca-UCg -3' miRNA: 3'- uGCCGCUCGU-GCCGCGCCGGGcuaAG- -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 26164 | 0.71 | 0.187116 |
Target: 5'- cGCGuCGAGCACgaguGGCGCGcGaUCCGAUUCa -3' miRNA: 3'- -UGCcGCUCGUG----CCGCGC-C-GGGCUAAG- -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 9431 | 0.71 | 0.196893 |
Target: 5'- cCGGCGAGCG-GGUGCGaaGCCCGcAUUg -3' miRNA: 3'- uGCCGCUCGUgCCGCGC--CGGGC-UAAg -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 18727 | 0.7 | 0.240554 |
Target: 5'- -aGGCGcuccucAGCuuCGGCGCGGCUCGGcgcgUCg -3' miRNA: 3'- ugCCGC------UCGu-GCCGCGCCGGGCUa---AG- -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 16029 | 0.7 | 0.246547 |
Target: 5'- cACGGgGAGCcCGcGCGauGCCgGGUUCg -3' miRNA: 3'- -UGCCgCUCGuGC-CGCgcCGGgCUAAG- -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 12431 | 0.7 | 0.21779 |
Target: 5'- cCGGCGucGCggACGGCGCGGUgCCGAg-- -3' miRNA: 3'- uGCCGCu-CG--UGCCGCGCCG-GGCUaag -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 57285 | 0.7 | 0.223303 |
Target: 5'- gACGGCGAGguCGGCGCG--CUGAUcgUCg -3' miRNA: 3'- -UGCCGCUCguGCCGCGCcgGGCUA--AG- -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 12732 | 0.7 | 0.234683 |
Target: 5'- cGCGGCGAGCACcugauGGUGCccgucgaugauGuGCCCGucGUUCg -3' miRNA: 3'- -UGCCGCUCGUG-----CCGCG-----------C-CGGGC--UAAG- -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 14053 | 0.7 | 0.246547 |
Target: 5'- -gGGCGccgccGGCGuCGGUGCGGCuucggccgCCGGUUCg -3' miRNA: 3'- ugCCGC-----UCGU-GCCGCGCCG--------GGCUAAG- -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 20582 | 0.69 | 0.252664 |
Target: 5'- cCGGCGAGCAgcGCGCGGCgCGccgCa -3' miRNA: 3'- uGCCGCUCGUgcCGCGCCGgGCuaaG- -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 29217 | 0.69 | 0.252664 |
Target: 5'- cACGGCGccGCACGGCGC-GCacaCGAcgUUCg -3' miRNA: 3'- -UGCCGCu-CGUGCCGCGcCGg--GCU--AAG- -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 16980 | 0.69 | 0.252664 |
Target: 5'- uCGGCGAGCGC-GCG-GGCCUGcacgUCg -3' miRNA: 3'- uGCCGCUCGUGcCGCgCCGGGCua--AG- -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 20094 | 0.69 | 0.252664 |
Target: 5'- uCGGUGAGCGCGucgccGCGCgaauucGGCCCGGc-- -3' miRNA: 3'- uGCCGCUCGUGC-----CGCG------CCGGGCUaag -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 22134 | 0.69 | 0.252664 |
Target: 5'- gGCGGCGAugACGGCGCcGCCgGAa-- -3' miRNA: 3'- -UGCCGCUcgUGCCGCGcCGGgCUaag -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 11894 | 0.69 | 0.261435 |
Target: 5'- cCGGCGaAGCggucggugccguucgGCGGCGuCGGCUCGGUc- -3' miRNA: 3'- uGCCGC-UCG---------------UGCCGC-GCCGGGCUAag -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 17359 | 0.69 | 0.258904 |
Target: 5'- cCGGCGcgggcGGCGCGGCG-GGCCCc---- -3' miRNA: 3'- uGCCGC-----UCGUGCCGCgCCGGGcuaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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