miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23919 5' -62 NC_005262.1 + 35361 1.09 0.000286
Target:  5'- cACGGCGAGCACGGCGCGGCCCGAUUCg -3'
miRNA:   3'- -UGCCGCUCGUGCCGCGCCGGGCUAAG- -5'
23919 5' -62 NC_005262.1 + 5076 0.8 0.042197
Target:  5'- gGCGGCGGcGCgugcgaccggcucgGCGGUGCGcGCCCGGUUCa -3'
miRNA:   3'- -UGCCGCU-CG--------------UGCCGCGC-CGGGCUAAG- -5'
23919 5' -62 NC_005262.1 + 43403 0.8 0.046115
Target:  5'- gGCGGCGAGCucaACGGCGCGGCgcucaacgucuauCCGAUc- -3'
miRNA:   3'- -UGCCGCUCG---UGCCGCGCCG-------------GGCUAag -5'
23919 5' -62 NC_005262.1 + 3294 0.77 0.075885
Target:  5'- gGCGGCcuGCGCcGCGCGGCCCGGcgUCu -3'
miRNA:   3'- -UGCCGcuCGUGcCGCGCCGGGCUa-AG- -5'
23919 5' -62 NC_005262.1 + 41567 0.76 0.080136
Target:  5'- cCGGCGuGgGCGGCGCGGCCgUGAgcuugUCg -3'
miRNA:   3'- uGCCGCuCgUGCCGCGCCGG-GCUa----AG- -5'
23919 5' -62 NC_005262.1 + 14453 0.76 0.082345
Target:  5'- uCaGCGAGCGCGGCGCGcGCCUGcucgUCg -3'
miRNA:   3'- uGcCGCUCGUGCCGCGC-CGGGCua--AG- -5'
23919 5' -62 NC_005262.1 + 17211 0.76 0.08694
Target:  5'- uGCGGCGAGgACGGCGCuGGCgUCGuggUCg -3'
miRNA:   3'- -UGCCGCUCgUGCCGCG-CCG-GGCua-AG- -5'
23919 5' -62 NC_005262.1 + 46659 0.75 0.10223
Target:  5'- aGCGGC-AGCAUGGCGcCGGCaCCGAc-- -3'
miRNA:   3'- -UGCCGcUCGUGCCGC-GCCG-GGCUaag -5'
23919 5' -62 NC_005262.1 + 52385 0.75 0.107868
Target:  5'- uCGGCG-GCcCGGCGCGGCgCGGcUUCg -3'
miRNA:   3'- uGCCGCuCGuGCCGCGCCGgGCU-AAG- -5'
23919 5' -62 NC_005262.1 + 4661 0.75 0.107868
Target:  5'- cGCGGCGA-CGCGGCcCGGC-CGGUUCg -3'
miRNA:   3'- -UGCCGCUcGUGCCGcGCCGgGCUAAG- -5'
23919 5' -62 NC_005262.1 + 14016 0.74 0.123261
Target:  5'- -gGGCGuccGGCGCGGCaGCGGCCgGAgccUCg -3'
miRNA:   3'- ugCCGC---UCGUGCCG-CGCCGGgCUa--AG- -5'
23919 5' -62 NC_005262.1 + 43821 0.74 0.129972
Target:  5'- cGCGGCGA-CACGGcCGCGGgCCGGc-- -3'
miRNA:   3'- -UGCCGCUcGUGCC-GCGCCgGGCUaag -5'
23919 5' -62 NC_005262.1 + 41296 0.73 0.133101
Target:  5'- -gGGCGAcaucaagGUAUGGCGCGGCgCGAUUg -3'
miRNA:   3'- ugCCGCU-------CGUGCCGCGCCGgGCUAAg -5'
23919 5' -62 NC_005262.1 + 46906 0.73 0.13702
Target:  5'- gGCGGUGcGGUGUGGUGCGGCCCGGcgCg -3'
miRNA:   3'- -UGCCGC-UCGUGCCGCGCCGGGCUaaG- -5'
23919 5' -62 NC_005262.1 + 46775 0.73 0.144038
Target:  5'- gGCGGCGAcGCGCGGUaucaacgGCGGCgagCCGAUg- -3'
miRNA:   3'- -UGCCGCU-CGUGCCG-------CGCCG---GGCUAag -5'
23919 5' -62 NC_005262.1 + 45033 0.73 0.144416
Target:  5'- gAUGGCGAGCAuggggaucaaccCGGCgaGCGGCC-GAUUCc -3'
miRNA:   3'- -UGCCGCUCGU------------GCCG--CGCCGGgCUAAG- -5'
23919 5' -62 NC_005262.1 + 38954 0.73 0.14825
Target:  5'- cUGGCGcagggugaucGGCACGGCGcCGGCCgCGAUc- -3'
miRNA:   3'- uGCCGC----------UCGUGCCGC-GCCGG-GCUAag -5'
23919 5' -62 NC_005262.1 + 33163 0.72 0.160312
Target:  5'- cGCGGgcaccuugcCGAGCGuCGGCgGCGGCUCGAUcuUCg -3'
miRNA:   3'- -UGCC---------GCUCGU-GCCG-CGCCGGGCUA--AG- -5'
23919 5' -62 NC_005262.1 + 5182 0.72 0.160312
Target:  5'- gGCGucGCGGGCGCgGGCGCGGCCgGcg-Cg -3'
miRNA:   3'- -UGC--CGCUCGUG-CCGCGCCGGgCuaaG- -5'
23919 5' -62 NC_005262.1 + 8145 0.72 0.168838
Target:  5'- cCGGCGuGC-CGGaCGCGGCCaCGAg-- -3'
miRNA:   3'- uGCCGCuCGuGCC-GCGCCGG-GCUaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.