miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23919 5' -62 NC_005262.1 + 15613 0.72 0.177768
Target:  5'- uGCGGCagGAGCGCaucgaGGCGCGGCUgaaCGcgUCg -3'
miRNA:   3'- -UGCCG--CUCGUG-----CCGCGCCGG---GCuaAG- -5'
23919 5' -62 NC_005262.1 + 13791 0.71 0.182389
Target:  5'- uCGGUGGGCGcCGGCGCGGCUUca-UCg -3'
miRNA:   3'- uGCCGCUCGU-GCCGCGCCGGGcuaAG- -5'
23919 5' -62 NC_005262.1 + 26164 0.71 0.187116
Target:  5'- cGCGuCGAGCACgaguGGCGCGcGaUCCGAUUCa -3'
miRNA:   3'- -UGCcGCUCGUG----CCGCGC-C-GGGCUAAG- -5'
23919 5' -62 NC_005262.1 + 29775 0.71 0.187116
Target:  5'- cGCGGC--GCACGaUGCGGCCCGGcgUCa -3'
miRNA:   3'- -UGCCGcuCGUGCcGCGCCGGGCUa-AG- -5'
23919 5' -62 NC_005262.1 + 9431 0.71 0.196893
Target:  5'- cCGGCGAGCG-GGUGCGaaGCCCGcAUUg -3'
miRNA:   3'- uGCCGCUCGUgCCGCGC--CGGGC-UAAg -5'
23919 5' -62 NC_005262.1 + 16084 0.71 0.207114
Target:  5'- gGCGGCGAGCcgccgccCGGCGCGGUgCuugGcgUCa -3'
miRNA:   3'- -UGCCGCUCGu------GCCGCGCCGgG---CuaAG- -5'
23919 5' -62 NC_005262.1 + 51675 0.71 0.207114
Target:  5'- cGCGGCGAucugcucgcgcGCACGGCGgCGcugauugcGCCCGAa-- -3'
miRNA:   3'- -UGCCGCU-----------CGUGCCGC-GC--------CGGGCUaag -5'
23919 5' -62 NC_005262.1 + 12431 0.7 0.21779
Target:  5'- cCGGCGucGCggACGGCGCGGUgCCGAg-- -3'
miRNA:   3'- uGCCGCu-CG--UGCCGCGCCG-GGCUaag -5'
23919 5' -62 NC_005262.1 + 57285 0.7 0.223303
Target:  5'- gACGGCGAGguCGGCGCG--CUGAUcgUCg -3'
miRNA:   3'- -UGCCGCUCguGCCGCGCcgGGCUA--AG- -5'
23919 5' -62 NC_005262.1 + 12732 0.7 0.234683
Target:  5'- cGCGGCGAGCACcugauGGUGCccgucgaugauGuGCCCGucGUUCg -3'
miRNA:   3'- -UGCCGCUCGUG-----CCGCG-----------C-CGGGC--UAAG- -5'
23919 5' -62 NC_005262.1 + 18727 0.7 0.240554
Target:  5'- -aGGCGcuccucAGCuuCGGCGCGGCUCGGcgcgUCg -3'
miRNA:   3'- ugCCGC------UCGu-GCCGCGCCGGGCUa---AG- -5'
23919 5' -62 NC_005262.1 + 16029 0.7 0.246547
Target:  5'- cACGGgGAGCcCGcGCGauGCCgGGUUCg -3'
miRNA:   3'- -UGCCgCUCGuGC-CGCgcCGGgCUAAG- -5'
23919 5' -62 NC_005262.1 + 14053 0.7 0.246547
Target:  5'- -gGGCGccgccGGCGuCGGUGCGGCuucggccgCCGGUUCg -3'
miRNA:   3'- ugCCGC-----UCGU-GCCGCGCCG--------GGCUAAG- -5'
23919 5' -62 NC_005262.1 + 53817 0.69 0.250816
Target:  5'- aGCGGCacGGGCAucgagcugacgcacCGGCGCGGCgCGGa-- -3'
miRNA:   3'- -UGCCG--CUCGU--------------GCCGCGCCGgGCUaag -5'
23919 5' -62 NC_005262.1 + 51518 0.69 0.250816
Target:  5'- aACGGCGAGacgaccgugcgcaaCACGGCGacCGGCUCGcgUa -3'
miRNA:   3'- -UGCCGCUC--------------GUGCCGC--GCCGGGCuaAg -5'
23919 5' -62 NC_005262.1 + 33880 0.69 0.252664
Target:  5'- cGCGcGCGAgacgaucguGCGuCGGCcgGCGGCCCGAUc- -3'
miRNA:   3'- -UGC-CGCU---------CGU-GCCG--CGCCGGGCUAag -5'
23919 5' -62 NC_005262.1 + 22134 0.69 0.252664
Target:  5'- gGCGGCGAugACGGCGCcGCCgGAa-- -3'
miRNA:   3'- -UGCCGCUcgUGCCGCGcCGGgCUaag -5'
23919 5' -62 NC_005262.1 + 16980 0.69 0.252664
Target:  5'- uCGGCGAGCGC-GCG-GGCCUGcacgUCg -3'
miRNA:   3'- uGCCGCUCGUGcCGCgCCGGGCua--AG- -5'
23919 5' -62 NC_005262.1 + 20582 0.69 0.252664
Target:  5'- cCGGCGAGCAgcGCGCGGCgCGccgCa -3'
miRNA:   3'- uGCCGCUCGUgcCGCGCCGgGCuaaG- -5'
23919 5' -62 NC_005262.1 + 29217 0.69 0.252664
Target:  5'- cACGGCGccGCACGGCGC-GCacaCGAcgUUCg -3'
miRNA:   3'- -UGCCGCu-CGUGCCGCGcCGg--GCU--AAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.