miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23919 5' -62 NC_005262.1 + 20094 0.69 0.252664
Target:  5'- uCGGUGAGCGCGucgccGCGCgaauucGGCCCGGc-- -3'
miRNA:   3'- uGCCGCUCGUGC-----CGCG------CCGGGCUaag -5'
23919 5' -62 NC_005262.1 + 17359 0.69 0.258904
Target:  5'- cCGGCGcgggcGGCGCGGCG-GGCCCc---- -3'
miRNA:   3'- uGCCGC-----UCGUGCCGCgCCGGGcuaag -5'
23919 5' -62 NC_005262.1 + 11894 0.69 0.261435
Target:  5'- cCGGCGaAGCggucggugccguucgGCGGCGuCGGCUCGGUc- -3'
miRNA:   3'- uGCCGC-UCG---------------UGCCGC-GCCGGGCUAag -5'
23919 5' -62 NC_005262.1 + 13478 0.69 0.271762
Target:  5'- cGCGGCGGGCgcuGCGGC-CGGCUCc---- -3'
miRNA:   3'- -UGCCGCUCG---UGCCGcGCCGGGcuaag -5'
23919 5' -62 NC_005262.1 + 13758 0.69 0.271762
Target:  5'- uCGG-GAGCAgcCGGCGcCGGCUCGGgcUUCa -3'
miRNA:   3'- uGCCgCUCGU--GCCGC-GCCGGGCU--AAG- -5'
23919 5' -62 NC_005262.1 + 20741 0.69 0.271762
Target:  5'- cGCGGC--GCGCGGUGcCGGCCgGGUc- -3'
miRNA:   3'- -UGCCGcuCGUGCCGC-GCCGGgCUAag -5'
23919 5' -62 NC_005262.1 + 33939 0.69 0.274394
Target:  5'- cGCGGCGGGCacGCGGCaagcgaucccggaacGCGGCgUCGAg-- -3'
miRNA:   3'- -UGCCGCUCG--UGCCG---------------CGCCG-GGCUaag -5'
23919 5' -62 NC_005262.1 + 61465 0.69 0.274394
Target:  5'- gACGGCGaAGCGCuagacgacaucuucGCGCGGCCgGAa-- -3'
miRNA:   3'- -UGCCGC-UCGUGc-------------CGCGCCGGgCUaag -5'
23919 5' -62 NC_005262.1 + 21766 0.69 0.285128
Target:  5'- uCGGCuugcGGUACGGgGUGaggccGCCCGAUUCg -3'
miRNA:   3'- uGCCGc---UCGUGCCgCGC-----CGGGCUAAG- -5'
23919 5' -62 NC_005262.1 + 48481 0.68 0.292003
Target:  5'- cCGcGUGGGCACGG-GCGGCgCGAc-- -3'
miRNA:   3'- uGC-CGCUCGUGCCgCGCCGgGCUaag -5'
23919 5' -62 NC_005262.1 + 42149 0.68 0.299007
Target:  5'- cGCGGCGccgGGCcCGGuCGCGG-CCGAUcgUCu -3'
miRNA:   3'- -UGCCGC---UCGuGCC-GCGCCgGGCUA--AG- -5'
23919 5' -62 NC_005262.1 + 63698 0.68 0.305422
Target:  5'- cCGGUGAcaugcgcagaagcGUGCGGCGCGG-CCGAcUUCu -3'
miRNA:   3'- uGCCGCU-------------CGUGCCGCGCCgGGCU-AAG- -5'
23919 5' -62 NC_005262.1 + 21548 0.68 0.306141
Target:  5'- cGCaGUGAGCGCGGCGCucGGCaUCGGa-- -3'
miRNA:   3'- -UGcCGCUCGUGCCGCG--CCG-GGCUaag -5'
23919 5' -62 NC_005262.1 + 15235 0.68 0.313404
Target:  5'- -gGGuCGAGCACcuuGuaGCGGCCCGGcUCc -3'
miRNA:   3'- ugCC-GCUCGUG---CcgCGCCGGGCUaAG- -5'
23919 5' -62 NC_005262.1 + 28132 0.68 0.313404
Target:  5'- gAC-GUGAGCACGaGCuGCGGCaCCGAg-- -3'
miRNA:   3'- -UGcCGCUCGUGC-CG-CGCCG-GGCUaag -5'
23919 5' -62 NC_005262.1 + 17127 0.68 0.313404
Target:  5'- uCGGCGGGCGuCGGUGCcGGCgCCa---- -3'
miRNA:   3'- uGCCGCUCGU-GCCGCG-CCG-GGcuaag -5'
23919 5' -62 NC_005262.1 + 15996 0.68 0.320797
Target:  5'- uCGGCGuGCA--GCGCGGCaCCGAc-- -3'
miRNA:   3'- uGCCGCuCGUgcCGCGCCG-GGCUaag -5'
23919 5' -62 NC_005262.1 + 23358 0.68 0.320797
Target:  5'- cCGGCGugaagcGCGCGGCGgcgaaGGCCCGc--- -3'
miRNA:   3'- uGCCGCu-----CGUGCCGCg----CCGGGCuaag -5'
23919 5' -62 NC_005262.1 + 8903 0.68 0.320797
Target:  5'- gACGGUccgcucuuggGuGCGCGGCGaaaaGcGCCCGAUUa -3'
miRNA:   3'- -UGCCG----------CuCGUGCCGCg---C-CGGGCUAAg -5'
23919 5' -62 NC_005262.1 + 41529 0.68 0.32832
Target:  5'- uGCGGgGAcGUAUGGCGaCGGCgUGAUg- -3'
miRNA:   3'- -UGCCgCU-CGUGCCGC-GCCGgGCUAag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.