miRNA display CGI


Results 61 - 80 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23919 5' -62 NC_005262.1 + 41529 0.68 0.32832
Target:  5'- uGCGGgGAcGUAUGGCGaCGGCgUGAUg- -3'
miRNA:   3'- -UGCCgCU-CGUGCCGC-GCCGgGCUAag -5'
23919 5' -62 NC_005262.1 + 49182 0.67 0.335201
Target:  5'- aGCGGCGcGCACGGCGaugaucucCGGCaugcuggCCGAg-- -3'
miRNA:   3'- -UGCCGCuCGUGCCGC--------GCCG-------GGCUaag -5'
23919 5' -62 NC_005262.1 + 24345 0.67 0.335973
Target:  5'- uGCGGCucuGCGuCGGCGCG-CCUGAUa- -3'
miRNA:   3'- -UGCCGcu-CGU-GCCGCGCcGGGCUAag -5'
23919 5' -62 NC_005262.1 + 41380 0.67 0.335973
Target:  5'- cCGGCGAGCA-GGCG-GcGCUCGAUc- -3'
miRNA:   3'- uGCCGCUCGUgCCGCgC-CGGGCUAag -5'
23919 5' -62 NC_005262.1 + 6866 0.67 0.335973
Target:  5'- uCGGCGuGCGCuucucgaGCGCGGCCUuGAUcUCg -3'
miRNA:   3'- uGCCGCuCGUGc------CGCGCCGGG-CUA-AG- -5'
23919 5' -62 NC_005262.1 + 32320 0.67 0.34297
Target:  5'- gACGGCGAGguCGGCGgaccaacgcuuuaCGGCUuuCGGaUCg -3'
miRNA:   3'- -UGCCGCUCguGCCGC-------------GCCGG--GCUaAG- -5'
23919 5' -62 NC_005262.1 + 38546 0.67 0.343755
Target:  5'- gGCGGCgcagGAGC-CGGCGuUGcGCgCGGUUCg -3'
miRNA:   3'- -UGCCG----CUCGuGCCGC-GC-CGgGCUAAG- -5'
23919 5' -62 NC_005262.1 + 21843 0.67 0.350868
Target:  5'- -aGGCGcGGCACaaGGCGCGggauuucGCCCGAg-- -3'
miRNA:   3'- ugCCGC-UCGUG--CCGCGC-------CGGGCUaag -5'
23919 5' -62 NC_005262.1 + 52573 0.67 0.351665
Target:  5'- cGCuGuCGAGCuCGGCGCGGCUcuCGAUc- -3'
miRNA:   3'- -UGcC-GCUCGuGCCGCGCCGG--GCUAag -5'
23919 5' -62 NC_005262.1 + 16489 0.67 0.351665
Target:  5'- cCGGaCGAGCugGGCGaGGCgCUGGg-- -3'
miRNA:   3'- uGCC-GCUCGugCCGCgCCG-GGCUaag -5'
23919 5' -62 NC_005262.1 + 40722 0.67 0.359704
Target:  5'- gGCGGCgcugacgcccucGAGCACgGGCgGCGGCgCG-UUCc -3'
miRNA:   3'- -UGCCG------------CUCGUG-CCG-CGCCGgGCuAAG- -5'
23919 5' -62 NC_005262.1 + 4561 0.67 0.359704
Target:  5'- cGCGGCGcaucucgcgccAGCgGCGGCGCuGCUCGGg-- -3'
miRNA:   3'- -UGCCGC-----------UCG-UGCCGCGcCGGGCUaag -5'
23919 5' -62 NC_005262.1 + 10464 0.67 0.359704
Target:  5'- uCGGCGAGguaGCGGCGC-GCgCGGUcgcUCg -3'
miRNA:   3'- uGCCGCUCg--UGCCGCGcCGgGCUA---AG- -5'
23919 5' -62 NC_005262.1 + 30929 0.67 0.359704
Target:  5'- cGCGGCGAacgcucggcgccGCAC-GUGCGGgCCGAa-- -3'
miRNA:   3'- -UGCCGCU------------CGUGcCGCGCCgGGCUaag -5'
23919 5' -62 NC_005262.1 + 53080 0.67 0.359704
Target:  5'- uGCGG-GAGCGcCGGCcgcgugcgcGCGGCCuCGAUc- -3'
miRNA:   3'- -UGCCgCUCGU-GCCG---------CGCCGG-GCUAag -5'
23919 5' -62 NC_005262.1 + 45646 0.67 0.359704
Target:  5'- -aGGCGGGCAC-GCGCu-CCCGGUUg -3'
miRNA:   3'- ugCCGCUCGUGcCGCGccGGGCUAAg -5'
23919 5' -62 NC_005262.1 + 24931 0.67 0.365407
Target:  5'- cAUGGCGGgaugcgcacaugccGCGCGGCGC-GCCCaGcUUCa -3'
miRNA:   3'- -UGCCGCU--------------CGUGCCGCGcCGGG-CuAAG- -5'
23919 5' -62 NC_005262.1 + 10075 0.67 0.367048
Target:  5'- cGCGuuCGAGCgccACGGCcuucgacGCGGCCgGGUUCu -3'
miRNA:   3'- -UGCc-GCUCG---UGCCG-------CGCCGGgCUAAG- -5'
23919 5' -62 NC_005262.1 + 17685 0.67 0.367048
Target:  5'- aGCGGCGAagaaGC-CGGCcguggucGCuGGCCCGAa-- -3'
miRNA:   3'- -UGCCGCU----CGuGCCG-------CG-CCGGGCUaag -5'
23919 5' -62 NC_005262.1 + 29777 0.67 0.367871
Target:  5'- cCGGCGuAGUgccggACGGCGCGGCaCCc---- -3'
miRNA:   3'- uGCCGC-UCG-----UGCCGCGCCG-GGcuaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.