miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23919 5' -62 NC_005262.1 + 2091 0.66 0.410572
Target:  5'- cGCGcCGAGCGaaccCGGCGCGcCCUGAUcgUCa -3'
miRNA:   3'- -UGCcGCUCGU----GCCGCGCcGGGCUA--AG- -5'
23919 5' -62 NC_005262.1 + 3294 0.77 0.075885
Target:  5'- gGCGGCcuGCGCcGCGCGGCCCGGcgUCu -3'
miRNA:   3'- -UGCCGcuCGUGcCGCGCCGGGCUa-AG- -5'
23919 5' -62 NC_005262.1 + 4561 0.67 0.359704
Target:  5'- cGCGGCGcaucucgcgccAGCgGCGGCGCuGCUCGGg-- -3'
miRNA:   3'- -UGCCGC-----------UCG-UGCCGCGcCGGGCUaag -5'
23919 5' -62 NC_005262.1 + 4661 0.75 0.107868
Target:  5'- cGCGGCGA-CGCGGCcCGGC-CGGUUCg -3'
miRNA:   3'- -UGCCGCUcGUGCCGcGCCGgGCUAAG- -5'
23919 5' -62 NC_005262.1 + 5076 0.8 0.042197
Target:  5'- gGCGGCGGcGCgugcgaccggcucgGCGGUGCGcGCCCGGUUCa -3'
miRNA:   3'- -UGCCGCU-CG--------------UGCCGCGC-CGGGCUAAG- -5'
23919 5' -62 NC_005262.1 + 5182 0.72 0.160312
Target:  5'- gGCGucGCGGGCGCgGGCGCGGCCgGcg-Cg -3'
miRNA:   3'- -UGC--CGCUCGUG-CCGCGCCGGgCuaaG- -5'
23919 5' -62 NC_005262.1 + 6119 0.66 0.384581
Target:  5'- aACGGCG-GCACagucgccucgauGuGCGCGGCCgGGa-- -3'
miRNA:   3'- -UGCCGCuCGUG------------C-CGCGCCGGgCUaag -5'
23919 5' -62 NC_005262.1 + 6866 0.67 0.335973
Target:  5'- uCGGCGuGCGCuucucgaGCGCGGCCUuGAUcUCg -3'
miRNA:   3'- uGCCGCuCGUGc------CGCGCCGGG-CUA-AG- -5'
23919 5' -62 NC_005262.1 + 7534 0.67 0.376164
Target:  5'- uCGGCGGcGCGuCGGCGCG-CUCGAc-- -3'
miRNA:   3'- uGCCGCU-CGU-GCCGCGCcGGGCUaag -5'
23919 5' -62 NC_005262.1 + 7764 0.66 0.428494
Target:  5'- uGCGGCGGGCccuuGCGGuUGCGGaUCgCGGUg- -3'
miRNA:   3'- -UGCCGCUCG----UGCC-GCGCC-GG-GCUAag -5'
23919 5' -62 NC_005262.1 + 8145 0.72 0.168838
Target:  5'- cCGGCGuGC-CGGaCGCGGCCaCGAg-- -3'
miRNA:   3'- uGCCGCuCGuGCC-GCGCCGG-GCUaag -5'
23919 5' -62 NC_005262.1 + 8892 0.66 0.410572
Target:  5'- -gGuGCGAGCcgucgaACuGGCGCGGCgCGAUg- -3'
miRNA:   3'- ugC-CGCUCG------UG-CCGCGCCGgGCUAag -5'
23919 5' -62 NC_005262.1 + 8903 0.68 0.320797
Target:  5'- gACGGUccgcucuuggGuGCGCGGCGaaaaGcGCCCGAUUa -3'
miRNA:   3'- -UGCCG----------CuCGUGCCGCg---C-CGGGCUAAg -5'
23919 5' -62 NC_005262.1 + 9431 0.71 0.196893
Target:  5'- cCGGCGAGCG-GGUGCGaaGCCCGcAUUg -3'
miRNA:   3'- uGCCGCUCGUgCCGCGC--CGGGC-UAAg -5'
23919 5' -62 NC_005262.1 + 10075 0.67 0.367048
Target:  5'- cGCGuuCGAGCgccACGGCcuucgacGCGGCCgGGUUCu -3'
miRNA:   3'- -UGCc-GCUCG---UGCCG-------CGCCGGgCUAAG- -5'
23919 5' -62 NC_005262.1 + 10464 0.67 0.359704
Target:  5'- uCGGCGAGguaGCGGCGC-GCgCGGUcgcUCg -3'
miRNA:   3'- uGCCGCUCg--UGCCGCGcCGgGCUA---AG- -5'
23919 5' -62 NC_005262.1 + 10584 0.66 0.410572
Target:  5'- cGCGGagcAGCGCGGCGCGaGCggcuUCGAUg- -3'
miRNA:   3'- -UGCCgc-UCGUGCCGCGC-CG----GGCUAag -5'
23919 5' -62 NC_005262.1 + 11894 0.69 0.261435
Target:  5'- cCGGCGaAGCggucggugccguucgGCGGCGuCGGCUCGGUc- -3'
miRNA:   3'- uGCCGC-UCG---------------UGCCGC-GCCGGGCUAag -5'
23919 5' -62 NC_005262.1 + 12431 0.7 0.21779
Target:  5'- cCGGCGucGCggACGGCGCGGUgCCGAg-- -3'
miRNA:   3'- uGCCGCu-CG--UGCCGCGCCG-GGCUaag -5'
23919 5' -62 NC_005262.1 + 12658 0.66 0.401788
Target:  5'- cGCGcGCGGcGCGCGGCGaacccuGcGCCCG-UUCu -3'
miRNA:   3'- -UGC-CGCU-CGUGCCGCg-----C-CGGGCuAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.