miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23919 5' -62 NC_005262.1 + 12732 0.7 0.234683
Target:  5'- cGCGGCGAGCACcugauGGUGCccgucgaugauGuGCCCGucGUUCg -3'
miRNA:   3'- -UGCCGCUCGUG-----CCGCG-----------C-CGGGC--UAAG- -5'
23919 5' -62 NC_005262.1 + 13397 0.66 0.393123
Target:  5'- cGCGGCGcugauCGCcGCGCGGUUCGcgUCg -3'
miRNA:   3'- -UGCCGCuc---GUGcCGCGCCGGGCuaAG- -5'
23919 5' -62 NC_005262.1 + 13478 0.69 0.271762
Target:  5'- cGCGGCGGGCgcuGCGGC-CGGCUCc---- -3'
miRNA:   3'- -UGCCGCUCG---UGCCGcGCCGGGcuaag -5'
23919 5' -62 NC_005262.1 + 13758 0.69 0.271762
Target:  5'- uCGG-GAGCAgcCGGCGcCGGCUCGGgcUUCa -3'
miRNA:   3'- uGCCgCUCGU--GCCGC-GCCGGGCU--AAG- -5'
23919 5' -62 NC_005262.1 + 13791 0.71 0.182389
Target:  5'- uCGGUGGGCGcCGGCGCGGCUUca-UCg -3'
miRNA:   3'- uGCCGCUCGU-GCCGCGCCGGGcuaAG- -5'
23919 5' -62 NC_005262.1 + 14016 0.74 0.123261
Target:  5'- -gGGCGuccGGCGCGGCaGCGGCCgGAgccUCg -3'
miRNA:   3'- ugCCGC---UCGUGCCG-CGCCGGgCUa--AG- -5'
23919 5' -62 NC_005262.1 + 14053 0.7 0.246547
Target:  5'- -gGGCGccgccGGCGuCGGUGCGGCuucggccgCCGGUUCg -3'
miRNA:   3'- ugCCGC-----UCGU-GCCGCGCCG--------GGCUAAG- -5'
23919 5' -62 NC_005262.1 + 14453 0.76 0.082345
Target:  5'- uCaGCGAGCGCGGCGCGcGCCUGcucgUCg -3'
miRNA:   3'- uGcCGCUCGUGCCGCGC-CGGGCua--AG- -5'
23919 5' -62 NC_005262.1 + 15125 0.66 0.393123
Target:  5'- -aGGCGuggaauGCACGcauCGCGGCCgGcgUCg -3'
miRNA:   3'- ugCCGCu-----CGUGCc--GCGCCGGgCuaAG- -5'
23919 5' -62 NC_005262.1 + 15235 0.68 0.313404
Target:  5'- -gGGuCGAGCACcuuGuaGCGGCCCGGcUCc -3'
miRNA:   3'- ugCC-GCUCGUG---CcgCGCCGGGCUaAG- -5'
23919 5' -62 NC_005262.1 + 15613 0.72 0.177768
Target:  5'- uGCGGCagGAGCGCaucgaGGCGCGGCUgaaCGcgUCg -3'
miRNA:   3'- -UGCCG--CUCGUG-----CCGCGCCGG---GCuaAG- -5'
23919 5' -62 NC_005262.1 + 15996 0.68 0.320797
Target:  5'- uCGGCGuGCA--GCGCGGCaCCGAc-- -3'
miRNA:   3'- uGCCGCuCGUgcCGCGCCG-GGCUaag -5'
23919 5' -62 NC_005262.1 + 16029 0.7 0.246547
Target:  5'- cACGGgGAGCcCGcGCGauGCCgGGUUCg -3'
miRNA:   3'- -UGCCgCUCGuGC-CGCgcCGGgCUAAG- -5'
23919 5' -62 NC_005262.1 + 16084 0.71 0.207114
Target:  5'- gGCGGCGAGCcgccgccCGGCGCGGUgCuugGcgUCa -3'
miRNA:   3'- -UGCCGCUCGu------GCCGCGCCGgG---CuaAG- -5'
23919 5' -62 NC_005262.1 + 16489 0.67 0.351665
Target:  5'- cCGGaCGAGCugGGCGaGGCgCUGGg-- -3'
miRNA:   3'- uGCC-GCUCGugCCGCgCCG-GGCUaag -5'
23919 5' -62 NC_005262.1 + 16980 0.69 0.252664
Target:  5'- uCGGCGAGCGC-GCG-GGCCUGcacgUCg -3'
miRNA:   3'- uGCCGCUCGUGcCGCgCCGGGCua--AG- -5'
23919 5' -62 NC_005262.1 + 17127 0.68 0.313404
Target:  5'- uCGGCGGGCGuCGGUGCcGGCgCCa---- -3'
miRNA:   3'- uGCCGCUCGU-GCCGCG-CCG-GGcuaag -5'
23919 5' -62 NC_005262.1 + 17211 0.76 0.08694
Target:  5'- uGCGGCGAGgACGGCGCuGGCgUCGuggUCg -3'
miRNA:   3'- -UGCCGCUCgUGCCGCG-CCG-GGCua-AG- -5'
23919 5' -62 NC_005262.1 + 17359 0.69 0.258904
Target:  5'- cCGGCGcgggcGGCGCGGCG-GGCCCc---- -3'
miRNA:   3'- uGCCGC-----UCGUGCCGCgCCGGGcuaag -5'
23919 5' -62 NC_005262.1 + 17685 0.67 0.367048
Target:  5'- aGCGGCGAagaaGC-CGGCcguggucGCuGGCCCGAa-- -3'
miRNA:   3'- -UGCCGCU----CGuGCCG-------CG-CCGGGCUaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.