miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23919 5' -62 NC_005262.1 + 18727 0.7 0.240554
Target:  5'- -aGGCGcuccucAGCuuCGGCGCGGCUCGGcgcgUCg -3'
miRNA:   3'- ugCCGC------UCGu-GCCGCGCCGGGCUa---AG- -5'
23919 5' -62 NC_005262.1 + 19435 0.66 0.410572
Target:  5'- cGCGGCaucuGAagcGCugGGCGuUGGCCuCGAUgcUCa -3'
miRNA:   3'- -UGCCG----CU---CGugCCGC-GCCGG-GCUA--AG- -5'
23919 5' -62 NC_005262.1 + 20094 0.69 0.252664
Target:  5'- uCGGUGAGCGCGucgccGCGCgaauucGGCCCGGc-- -3'
miRNA:   3'- uGCCGCUCGUGC-----CGCG------CCGGGCUaag -5'
23919 5' -62 NC_005262.1 + 20582 0.69 0.252664
Target:  5'- cCGGCGAGCAgcGCGCGGCgCGccgCa -3'
miRNA:   3'- uGCCGCUCGUgcCGCGCCGgGCuaaG- -5'
23919 5' -62 NC_005262.1 + 20741 0.69 0.271762
Target:  5'- cGCGGC--GCGCGGUGcCGGCCgGGUc- -3'
miRNA:   3'- -UGCCGcuCGUGCCGC-GCCGGgCUAag -5'
23919 5' -62 NC_005262.1 + 21379 0.67 0.376164
Target:  5'- uGCGGCcGGC-UGGCGCcGCCUGAa-- -3'
miRNA:   3'- -UGCCGcUCGuGCCGCGcCGGGCUaag -5'
23919 5' -62 NC_005262.1 + 21548 0.68 0.306141
Target:  5'- cGCaGUGAGCGCGGCGCucGGCaUCGGa-- -3'
miRNA:   3'- -UGcCGCUCGUGCCGCG--CCG-GGCUaag -5'
23919 5' -62 NC_005262.1 + 21766 0.69 0.285128
Target:  5'- uCGGCuugcGGUACGGgGUGaggccGCCCGAUUCg -3'
miRNA:   3'- uGCCGc---UCGUGCCgCGC-----CGGGCUAAG- -5'
23919 5' -62 NC_005262.1 + 21843 0.67 0.350868
Target:  5'- -aGGCGcGGCACaaGGCGCGggauuucGCCCGAg-- -3'
miRNA:   3'- ugCCGC-UCGUG--CCGCGC-------CGGGCUaag -5'
23919 5' -62 NC_005262.1 + 22134 0.69 0.252664
Target:  5'- gGCGGCGAugACGGCGCcGCCgGAa-- -3'
miRNA:   3'- -UGCCGCUcgUGCCGCGcCGGgCUaag -5'
23919 5' -62 NC_005262.1 + 22226 0.66 0.428494
Target:  5'- ---uCGAGUACguguugugGGCGUGGCCCGGaUCg -3'
miRNA:   3'- ugccGCUCGUG--------CCGCGCCGGGCUaAG- -5'
23919 5' -62 NC_005262.1 + 23358 0.68 0.320797
Target:  5'- cCGGCGugaagcGCGCGGCGgcgaaGGCCCGc--- -3'
miRNA:   3'- uGCCGCu-----CGUGCCGCg----CCGGGCuaag -5'
23919 5' -62 NC_005262.1 + 23957 0.66 0.393123
Target:  5'- uCGGCGAGUGUGGCGCGcaGUUCG-UUCg -3'
miRNA:   3'- uGCCGCUCGUGCCGCGC--CGGGCuAAG- -5'
23919 5' -62 NC_005262.1 + 24345 0.67 0.335973
Target:  5'- uGCGGCucuGCGuCGGCGCG-CCUGAUa- -3'
miRNA:   3'- -UGCCGcu-CGU-GCCGCGCcGGGCUAag -5'
23919 5' -62 NC_005262.1 + 24931 0.67 0.365407
Target:  5'- cAUGGCGGgaugcgcacaugccGCGCGGCGC-GCCCaGcUUCa -3'
miRNA:   3'- -UGCCGCU--------------CGUGCCGCGcCGGG-CuAAG- -5'
23919 5' -62 NC_005262.1 + 26164 0.71 0.187116
Target:  5'- cGCGuCGAGCACgaguGGCGCGcGaUCCGAUUCa -3'
miRNA:   3'- -UGCcGCUCGUG----CCGCGC-C-GGGCUAAG- -5'
23919 5' -62 NC_005262.1 + 28132 0.68 0.313404
Target:  5'- gAC-GUGAGCACGaGCuGCGGCaCCGAg-- -3'
miRNA:   3'- -UGcCGCUCGUGC-CG-CGCCG-GGCUaag -5'
23919 5' -62 NC_005262.1 + 29044 0.66 0.410572
Target:  5'- aGCGGCGccGGCACGacGCGCaccguguucGGCUCGAc-- -3'
miRNA:   3'- -UGCCGC--UCGUGC--CGCG---------CCGGGCUaag -5'
23919 5' -62 NC_005262.1 + 29217 0.69 0.252664
Target:  5'- cACGGCGccGCACGGCGC-GCacaCGAcgUUCg -3'
miRNA:   3'- -UGCCGCu-CGUGCCGCGcCGg--GCU--AAG- -5'
23919 5' -62 NC_005262.1 + 29655 0.66 0.387984
Target:  5'- cCGGCGGguagacguagaagauGCGCGGUGCGcGCUCG--UCg -3'
miRNA:   3'- uGCCGCU---------------CGUGCCGCGC-CGGGCuaAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.