miRNA display CGI


Results 61 - 80 of 113 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23919 5' -62 NC_005262.1 + 29775 0.71 0.187116
Target:  5'- cGCGGC--GCACGaUGCGGCCCGGcgUCa -3'
miRNA:   3'- -UGCCGcuCGUGCcGCGCCGGGCUa-AG- -5'
23919 5' -62 NC_005262.1 + 29777 0.67 0.367871
Target:  5'- cCGGCGuAGUgccggACGGCGCGGCaCCc---- -3'
miRNA:   3'- uGCCGC-UCG-----UGCCGCGCCG-GGcuaag -5'
23919 5' -62 NC_005262.1 + 30929 0.67 0.359704
Target:  5'- cGCGGCGAacgcucggcgccGCAC-GUGCGGgCCGAa-- -3'
miRNA:   3'- -UGCCGCU------------CGUGcCGCGCCgGGCUaag -5'
23919 5' -62 NC_005262.1 + 31091 0.68 0.32832
Target:  5'- -gGGCGAGC----CGCGGCCCGAc-- -3'
miRNA:   3'- ugCCGCUCGugccGCGCCGGGCUaag -5'
23919 5' -62 NC_005262.1 + 31630 0.67 0.376164
Target:  5'- cGCGGCaAGCcgaccuACGGCGauGCCCGcgUg -3'
miRNA:   3'- -UGCCGcUCG------UGCCGCgcCGGGCuaAg -5'
23919 5' -62 NC_005262.1 + 32320 0.67 0.34297
Target:  5'- gACGGCGAGguCGGCGgaccaacgcuuuaCGGCUuuCGGaUCg -3'
miRNA:   3'- -UGCCGCUCguGCCGC-------------GCCGG--GCUaAG- -5'
23919 5' -62 NC_005262.1 + 32843 0.66 0.425776
Target:  5'- uCGGCGAcaagguuucggcccGCAC-GUGCGGCgCCGAgcugUUCg -3'
miRNA:   3'- uGCCGCU--------------CGUGcCGCGCCG-GGCU----AAG- -5'
23919 5' -62 NC_005262.1 + 33163 0.72 0.160312
Target:  5'- cGCGGgcaccuugcCGAGCGuCGGCgGCGGCUCGAUcuUCg -3'
miRNA:   3'- -UGCC---------GCUCGU-GCCG-CGCCGGGCUA--AG- -5'
23919 5' -62 NC_005262.1 + 33880 0.69 0.252664
Target:  5'- cGCGcGCGAgacgaucguGCGuCGGCcgGCGGCCCGAUc- -3'
miRNA:   3'- -UGC-CGCU---------CGU-GCCG--CGCCGGGCUAag -5'
23919 5' -62 NC_005262.1 + 33939 0.69 0.274394
Target:  5'- cGCGGCGGGCacGCGGCaagcgaucccggaacGCGGCgUCGAg-- -3'
miRNA:   3'- -UGCCGCUCG--UGCCG---------------CGCCG-GGCUaag -5'
23919 5' -62 NC_005262.1 + 34138 0.66 0.427587
Target:  5'- cUGcGCGGGCGCGG-GCGGCaugccgcucgcugCCGAUg- -3'
miRNA:   3'- uGC-CGCUCGUGCCgCGCCG-------------GGCUAag -5'
23919 5' -62 NC_005262.1 + 35361 1.09 0.000286
Target:  5'- cACGGCGAGCACGGCGCGGCCCGAUUCg -3'
miRNA:   3'- -UGCCGCUCGUGCCGCGCCGGGCUAAG- -5'
23919 5' -62 NC_005262.1 + 37271 0.67 0.367871
Target:  5'- aACGGcCGAGCcacguucaACGuGCGCGGCgauCCG-UUCa -3'
miRNA:   3'- -UGCC-GCUCG--------UGC-CGCGCCG---GGCuAAG- -5'
23919 5' -62 NC_005262.1 + 38546 0.67 0.343755
Target:  5'- gGCGGCgcagGAGC-CGGCGuUGcGCgCGGUUCg -3'
miRNA:   3'- -UGCCG----CUCGuGCCGC-GC-CGgGCUAAG- -5'
23919 5' -62 NC_005262.1 + 38954 0.73 0.14825
Target:  5'- cUGGCGcagggugaucGGCACGGCGcCGGCCgCGAUc- -3'
miRNA:   3'- uGCCGC----------UCGUGCCGC-GCCGG-GCUAag -5'
23919 5' -62 NC_005262.1 + 40245 0.66 0.384581
Target:  5'- cGCGGCGGGCGguuggucaguCuGCGCGGUCCu---- -3'
miRNA:   3'- -UGCCGCUCGU----------GcCGCGCCGGGcuaag -5'
23919 5' -62 NC_005262.1 + 40643 0.66 0.401788
Target:  5'- cCGGCcacGGGCACGGCgucaGCGaCCCGAc-- -3'
miRNA:   3'- uGCCG---CUCGUGCCG----CGCcGGGCUaag -5'
23919 5' -62 NC_005262.1 + 40654 0.66 0.401788
Target:  5'- aGCGguauGCGaAGCGCGGUGCGGCgaaCGGg-- -3'
miRNA:   3'- -UGC----CGC-UCGUGCCGCGCCGg--GCUaag -5'
23919 5' -62 NC_005262.1 + 40722 0.67 0.359704
Target:  5'- gGCGGCgcugacgcccucGAGCACgGGCgGCGGCgCG-UUCc -3'
miRNA:   3'- -UGCCG------------CUCGUG-CCG-CGCCGgGCuAAG- -5'
23919 5' -62 NC_005262.1 + 41296 0.73 0.133101
Target:  5'- -gGGCGAcaucaagGUAUGGCGCGGCgCGAUUg -3'
miRNA:   3'- ugCCGCU-------CGUGCCGCGCCGgGCUAAg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.