miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23919 5' -62 NC_005262.1 + 63698 0.68 0.305422
Target:  5'- cCGGUGAcaugcgcagaagcGUGCGGCGCGG-CCGAcUUCu -3'
miRNA:   3'- uGCCGCU-------------CGUGCCGCGCCgGGCU-AAG- -5'
23919 5' -62 NC_005262.1 + 61536 0.66 0.428494
Target:  5'- uUGcGCGGGCcgucauCGaCGCGGCCCGAg-- -3'
miRNA:   3'- uGC-CGCUCGu-----GCcGCGCCGGGCUaag -5'
23919 5' -62 NC_005262.1 + 61465 0.69 0.274394
Target:  5'- gACGGCGaAGCGCuagacgacaucuucGCGCGGCCgGAa-- -3'
miRNA:   3'- -UGCCGC-UCGUGc-------------CGCGCCGGgCUaag -5'
23919 5' -62 NC_005262.1 + 61164 0.66 0.428494
Target:  5'- gGCGGCGGGCgagcugACGggcGCGCGGCgcuaCGAg-- -3'
miRNA:   3'- -UGCCGCUCG------UGC---CGCGCCGg---GCUaag -5'
23919 5' -62 NC_005262.1 + 59653 0.66 0.419475
Target:  5'- cACGGCGccaCGCGGCGCcguuuuuuuauGCCCGGcuUUCg -3'
miRNA:   3'- -UGCCGCuc-GUGCCGCGc----------CGGGCU--AAG- -5'
23919 5' -62 NC_005262.1 + 59517 0.66 0.387984
Target:  5'- gACGGCGAGUAUGGCccgaaggucaagcgcGCaaugGGCCaCGAg-- -3'
miRNA:   3'- -UGCCGCUCGUGCCG---------------CG----CCGG-GCUaag -5'
23919 5' -62 NC_005262.1 + 58859 0.66 0.384581
Target:  5'- uCGGCGAcgucacGC-CGGCGCaGCCCGcg-Cg -3'
miRNA:   3'- uGCCGCU------CGuGCCGCGcCGGGCuaaG- -5'
23919 5' -62 NC_005262.1 + 57500 0.66 0.401788
Target:  5'- cCGGCGAGCgcaagaagGCGGCGaaGgCCGAg-- -3'
miRNA:   3'- uGCCGCUCG--------UGCCGCgcCgGGCUaag -5'
23919 5' -62 NC_005262.1 + 57285 0.7 0.223303
Target:  5'- gACGGCGAGguCGGCGCG--CUGAUcgUCg -3'
miRNA:   3'- -UGCCGCUCguGCCGCGCcgGGCUA--AG- -5'
23919 5' -62 NC_005262.1 + 57135 0.66 0.393123
Target:  5'- cCGGCGAGUACauCGCGGCCgUGucggUCg -3'
miRNA:   3'- uGCCGCUCGUGccGCGCCGG-GCua--AG- -5'
23919 5' -62 NC_005262.1 + 56284 0.67 0.367871
Target:  5'- uCGGCGAGCAguCGGCgaagaaccGCGGCUuCGAc-- -3'
miRNA:   3'- uGCCGCUCGU--GCCG--------CGCCGG-GCUaag -5'
23919 5' -62 NC_005262.1 + 53817 0.69 0.250816
Target:  5'- aGCGGCacGGGCAucgagcugacgcacCGGCGCGGCgCGGa-- -3'
miRNA:   3'- -UGCCG--CUCGU--------------GCCGCGCCGgGCUaag -5'
23919 5' -62 NC_005262.1 + 53080 0.67 0.359704
Target:  5'- uGCGG-GAGCGcCGGCcgcgugcgcGCGGCCuCGAUc- -3'
miRNA:   3'- -UGCCgCUCGU-GCCG---------CGCCGG-GCUAag -5'
23919 5' -62 NC_005262.1 + 52573 0.67 0.351665
Target:  5'- cGCuGuCGAGCuCGGCGCGGCUcuCGAUc- -3'
miRNA:   3'- -UGcC-GCUCGuGCCGCGCCGG--GCUAag -5'
23919 5' -62 NC_005262.1 + 52385 0.75 0.107868
Target:  5'- uCGGCG-GCcCGGCGCGGCgCGGcUUCg -3'
miRNA:   3'- uGCCGCuCGuGCCGCGCCGgGCU-AAG- -5'
23919 5' -62 NC_005262.1 + 52334 0.66 0.401788
Target:  5'- cGCGcGCGAGCGCGGUa-GGCaCGAUg- -3'
miRNA:   3'- -UGC-CGCUCGUGCCGcgCCGgGCUAag -5'
23919 5' -62 NC_005262.1 + 51675 0.71 0.207114
Target:  5'- cGCGGCGAucugcucgcgcGCACGGCGgCGcugauugcGCCCGAa-- -3'
miRNA:   3'- -UGCCGCU-----------CGUGCCGC-GC--------CGGGCUaag -5'
23919 5' -62 NC_005262.1 + 51518 0.69 0.250816
Target:  5'- aACGGCGAGacgaccgugcgcaaCACGGCGacCGGCUCGcgUa -3'
miRNA:   3'- -UGCCGCUC--------------GUGCCGC--GCCGGGCuaAg -5'
23919 5' -62 NC_005262.1 + 50238 0.66 0.401788
Target:  5'- aGCGGaugccaAGCaACGGuCGCGGCCuCGAUg- -3'
miRNA:   3'- -UGCCgc----UCG-UGCC-GCGCCGG-GCUAag -5'
23919 5' -62 NC_005262.1 + 49711 0.66 0.401788
Target:  5'- gACGGCGuGCcggGCGGCGaacCGGCggCCGAa-- -3'
miRNA:   3'- -UGCCGCuCG---UGCCGC---GCCG--GGCUaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.