Results 21 - 40 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23919 | 5' | -62 | NC_005262.1 | + | 49182 | 0.67 | 0.335201 |
Target: 5'- aGCGGCGcGCACGGCGaugaucucCGGCaugcuggCCGAg-- -3' miRNA: 3'- -UGCCGCuCGUGCCGC--------GCCG-------GGCUaag -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 48481 | 0.68 | 0.292003 |
Target: 5'- cCGcGUGGGCACGG-GCGGCgCGAc-- -3' miRNA: 3'- uGC-CGCUCGUGCCgCGCCGgGCUaag -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 46906 | 0.73 | 0.13702 |
Target: 5'- gGCGGUGcGGUGUGGUGCGGCCCGGcgCg -3' miRNA: 3'- -UGCCGC-UCGUGCCGCGCCGGGCUaaG- -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 46775 | 0.73 | 0.144038 |
Target: 5'- gGCGGCGAcGCGCGGUaucaacgGCGGCgagCCGAUg- -3' miRNA: 3'- -UGCCGCU-CGUGCCG-------CGCCG---GGCUAag -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 46659 | 0.75 | 0.10223 |
Target: 5'- aGCGGC-AGCAUGGCGcCGGCaCCGAc-- -3' miRNA: 3'- -UGCCGcUCGUGCCGC-GCCG-GGCUaag -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 45646 | 0.67 | 0.359704 |
Target: 5'- -aGGCGGGCAC-GCGCu-CCCGGUUg -3' miRNA: 3'- ugCCGCUCGUGcCGCGccGGGCUAAg -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 45033 | 0.73 | 0.144416 |
Target: 5'- gAUGGCGAGCAuggggaucaaccCGGCgaGCGGCC-GAUUCc -3' miRNA: 3'- -UGCCGCUCGU------------GCCG--CGCCGGgCUAAG- -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 43821 | 0.74 | 0.129972 |
Target: 5'- cGCGGCGA-CACGGcCGCGGgCCGGc-- -3' miRNA: 3'- -UGCCGCUcGUGCC-GCGCCgGGCUaag -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 43403 | 0.8 | 0.046115 |
Target: 5'- gGCGGCGAGCucaACGGCGCGGCgcucaacgucuauCCGAUc- -3' miRNA: 3'- -UGCCGCUCG---UGCCGCGCCG-------------GGCUAag -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 42149 | 0.68 | 0.299007 |
Target: 5'- cGCGGCGccgGGCcCGGuCGCGG-CCGAUcgUCu -3' miRNA: 3'- -UGCCGC---UCGuGCC-GCGCCgGGCUA--AG- -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 41567 | 0.76 | 0.080136 |
Target: 5'- cCGGCGuGgGCGGCGCGGCCgUGAgcuugUCg -3' miRNA: 3'- uGCCGCuCgUGCCGCGCCGG-GCUa----AG- -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 41529 | 0.68 | 0.32832 |
Target: 5'- uGCGGgGAcGUAUGGCGaCGGCgUGAUg- -3' miRNA: 3'- -UGCCgCU-CGUGCCGC-GCCGgGCUAag -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 41380 | 0.67 | 0.335973 |
Target: 5'- cCGGCGAGCA-GGCG-GcGCUCGAUc- -3' miRNA: 3'- uGCCGCUCGUgCCGCgC-CGGGCUAag -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 41296 | 0.73 | 0.133101 |
Target: 5'- -gGGCGAcaucaagGUAUGGCGCGGCgCGAUUg -3' miRNA: 3'- ugCCGCU-------CGUGCCGCGCCGgGCUAAg -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 40722 | 0.67 | 0.359704 |
Target: 5'- gGCGGCgcugacgcccucGAGCACgGGCgGCGGCgCG-UUCc -3' miRNA: 3'- -UGCCG------------CUCGUG-CCG-CGCCGgGCuAAG- -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 40654 | 0.66 | 0.401788 |
Target: 5'- aGCGguauGCGaAGCGCGGUGCGGCgaaCGGg-- -3' miRNA: 3'- -UGC----CGC-UCGUGCCGCGCCGg--GCUaag -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 40643 | 0.66 | 0.401788 |
Target: 5'- cCGGCcacGGGCACGGCgucaGCGaCCCGAc-- -3' miRNA: 3'- uGCCG---CUCGUGCCG----CGCcGGGCUaag -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 40245 | 0.66 | 0.384581 |
Target: 5'- cGCGGCGGGCGguuggucaguCuGCGCGGUCCu---- -3' miRNA: 3'- -UGCCGCUCGU----------GcCGCGCCGGGcuaag -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 38954 | 0.73 | 0.14825 |
Target: 5'- cUGGCGcagggugaucGGCACGGCGcCGGCCgCGAUc- -3' miRNA: 3'- uGCCGC----------UCGUGCCGC-GCCGG-GCUAag -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 38546 | 0.67 | 0.343755 |
Target: 5'- gGCGGCgcagGAGC-CGGCGuUGcGCgCGGUUCg -3' miRNA: 3'- -UGCCG----CUCGuGCCGC-GC-CGgGCUAAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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