miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23919 5' -62 NC_005262.1 + 37271 0.67 0.367871
Target:  5'- aACGGcCGAGCcacguucaACGuGCGCGGCgauCCG-UUCa -3'
miRNA:   3'- -UGCC-GCUCG--------UGC-CGCGCCG---GGCuAAG- -5'
23919 5' -62 NC_005262.1 + 35361 1.09 0.000286
Target:  5'- cACGGCGAGCACGGCGCGGCCCGAUUCg -3'
miRNA:   3'- -UGCCGCUCGUGCCGCGCCGGGCUAAG- -5'
23919 5' -62 NC_005262.1 + 34138 0.66 0.427587
Target:  5'- cUGcGCGGGCGCGG-GCGGCaugccgcucgcugCCGAUg- -3'
miRNA:   3'- uGC-CGCUCGUGCCgCGCCG-------------GGCUAag -5'
23919 5' -62 NC_005262.1 + 33939 0.69 0.274394
Target:  5'- cGCGGCGGGCacGCGGCaagcgaucccggaacGCGGCgUCGAg-- -3'
miRNA:   3'- -UGCCGCUCG--UGCCG---------------CGCCG-GGCUaag -5'
23919 5' -62 NC_005262.1 + 33880 0.69 0.252664
Target:  5'- cGCGcGCGAgacgaucguGCGuCGGCcgGCGGCCCGAUc- -3'
miRNA:   3'- -UGC-CGCU---------CGU-GCCG--CGCCGGGCUAag -5'
23919 5' -62 NC_005262.1 + 33163 0.72 0.160312
Target:  5'- cGCGGgcaccuugcCGAGCGuCGGCgGCGGCUCGAUcuUCg -3'
miRNA:   3'- -UGCC---------GCUCGU-GCCG-CGCCGGGCUA--AG- -5'
23919 5' -62 NC_005262.1 + 32843 0.66 0.425776
Target:  5'- uCGGCGAcaagguuucggcccGCAC-GUGCGGCgCCGAgcugUUCg -3'
miRNA:   3'- uGCCGCU--------------CGUGcCGCGCCG-GGCU----AAG- -5'
23919 5' -62 NC_005262.1 + 32320 0.67 0.34297
Target:  5'- gACGGCGAGguCGGCGgaccaacgcuuuaCGGCUuuCGGaUCg -3'
miRNA:   3'- -UGCCGCUCguGCCGC-------------GCCGG--GCUaAG- -5'
23919 5' -62 NC_005262.1 + 31630 0.67 0.376164
Target:  5'- cGCGGCaAGCcgaccuACGGCGauGCCCGcgUg -3'
miRNA:   3'- -UGCCGcUCG------UGCCGCgcCGGGCuaAg -5'
23919 5' -62 NC_005262.1 + 31091 0.68 0.32832
Target:  5'- -gGGCGAGC----CGCGGCCCGAc-- -3'
miRNA:   3'- ugCCGCUCGugccGCGCCGGGCUaag -5'
23919 5' -62 NC_005262.1 + 30929 0.67 0.359704
Target:  5'- cGCGGCGAacgcucggcgccGCAC-GUGCGGgCCGAa-- -3'
miRNA:   3'- -UGCCGCU------------CGUGcCGCGCCgGGCUaag -5'
23919 5' -62 NC_005262.1 + 29777 0.67 0.367871
Target:  5'- cCGGCGuAGUgccggACGGCGCGGCaCCc---- -3'
miRNA:   3'- uGCCGC-UCG-----UGCCGCGCCG-GGcuaag -5'
23919 5' -62 NC_005262.1 + 29775 0.71 0.187116
Target:  5'- cGCGGC--GCACGaUGCGGCCCGGcgUCa -3'
miRNA:   3'- -UGCCGcuCGUGCcGCGCCGGGCUa-AG- -5'
23919 5' -62 NC_005262.1 + 29655 0.66 0.387984
Target:  5'- cCGGCGGguagacguagaagauGCGCGGUGCGcGCUCG--UCg -3'
miRNA:   3'- uGCCGCU---------------CGUGCCGCGC-CGGGCuaAG- -5'
23919 5' -62 NC_005262.1 + 29217 0.69 0.252664
Target:  5'- cACGGCGccGCACGGCGC-GCacaCGAcgUUCg -3'
miRNA:   3'- -UGCCGCu-CGUGCCGCGcCGg--GCU--AAG- -5'
23919 5' -62 NC_005262.1 + 29044 0.66 0.410572
Target:  5'- aGCGGCGccGGCACGacGCGCaccguguucGGCUCGAc-- -3'
miRNA:   3'- -UGCCGC--UCGUGC--CGCG---------CCGGGCUaag -5'
23919 5' -62 NC_005262.1 + 28132 0.68 0.313404
Target:  5'- gAC-GUGAGCACGaGCuGCGGCaCCGAg-- -3'
miRNA:   3'- -UGcCGCUCGUGC-CG-CGCCG-GGCUaag -5'
23919 5' -62 NC_005262.1 + 26164 0.71 0.187116
Target:  5'- cGCGuCGAGCACgaguGGCGCGcGaUCCGAUUCa -3'
miRNA:   3'- -UGCcGCUCGUG----CCGCGC-C-GGGCUAAG- -5'
23919 5' -62 NC_005262.1 + 24931 0.67 0.365407
Target:  5'- cAUGGCGGgaugcgcacaugccGCGCGGCGC-GCCCaGcUUCa -3'
miRNA:   3'- -UGCCGCU--------------CGUGCCGCGcCGGG-CuAAG- -5'
23919 5' -62 NC_005262.1 + 24345 0.67 0.335973
Target:  5'- uGCGGCucuGCGuCGGCGCG-CCUGAUa- -3'
miRNA:   3'- -UGCCGcu-CGU-GCCGCGCcGGGCUAag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.