miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23919 5' -62 NC_005262.1 + 8903 0.68 0.320797
Target:  5'- gACGGUccgcucuuggGuGCGCGGCGaaaaGcGCCCGAUUa -3'
miRNA:   3'- -UGCCG----------CuCGUGCCGCg---C-CGGGCUAAg -5'
23919 5' -62 NC_005262.1 + 51518 0.69 0.250816
Target:  5'- aACGGCGAGacgaccgugcgcaaCACGGCGacCGGCUCGcgUa -3'
miRNA:   3'- -UGCCGCUC--------------GUGCCGC--GCCGGGCuaAg -5'
23919 5' -62 NC_005262.1 + 53817 0.69 0.250816
Target:  5'- aGCGGCacGGGCAucgagcugacgcacCGGCGCGGCgCGGa-- -3'
miRNA:   3'- -UGCCG--CUCGU--------------GCCGCGCCGgGCUaag -5'
23919 5' -62 NC_005262.1 + 20582 0.69 0.252664
Target:  5'- cCGGCGAGCAgcGCGCGGCgCGccgCa -3'
miRNA:   3'- uGCCGCUCGUgcCGCGCCGgGCuaaG- -5'
23919 5' -62 NC_005262.1 + 33880 0.69 0.252664
Target:  5'- cGCGcGCGAgacgaucguGCGuCGGCcgGCGGCCCGAUc- -3'
miRNA:   3'- -UGC-CGCU---------CGU-GCCG--CGCCGGGCUAag -5'
23919 5' -62 NC_005262.1 + 33939 0.69 0.274394
Target:  5'- cGCGGCGGGCacGCGGCaagcgaucccggaacGCGGCgUCGAg-- -3'
miRNA:   3'- -UGCCGCUCG--UGCCG---------------CGCCG-GGCUaag -5'
23919 5' -62 NC_005262.1 + 61465 0.69 0.274394
Target:  5'- gACGGCGaAGCGCuagacgacaucuucGCGCGGCCgGAa-- -3'
miRNA:   3'- -UGCCGC-UCGUGc-------------CGCGCCGGgCUaag -5'
23919 5' -62 NC_005262.1 + 48481 0.68 0.292003
Target:  5'- cCGcGUGGGCACGG-GCGGCgCGAc-- -3'
miRNA:   3'- uGC-CGCUCGUGCCgCGCCGgGCUaag -5'
23919 5' -62 NC_005262.1 + 42149 0.68 0.299007
Target:  5'- cGCGGCGccgGGCcCGGuCGCGG-CCGAUcgUCu -3'
miRNA:   3'- -UGCCGC---UCGuGCC-GCGCCgGGCUA--AG- -5'
23919 5' -62 NC_005262.1 + 18727 0.7 0.240554
Target:  5'- -aGGCGcuccucAGCuuCGGCGCGGCUCGGcgcgUCg -3'
miRNA:   3'- ugCCGC------UCGu-GCCGCGCCGGGCUa---AG- -5'
23919 5' -62 NC_005262.1 + 9431 0.71 0.196893
Target:  5'- cCGGCGAGCG-GGUGCGaaGCCCGcAUUg -3'
miRNA:   3'- uGCCGCUCGUgCCGCGC--CGGGC-UAAg -5'
23919 5' -62 NC_005262.1 + 26164 0.71 0.187116
Target:  5'- cGCGuCGAGCACgaguGGCGCGcGaUCCGAUUCa -3'
miRNA:   3'- -UGCcGCUCGUG----CCGCGC-C-GGGCUAAG- -5'
23919 5' -62 NC_005262.1 + 43403 0.8 0.046115
Target:  5'- gGCGGCGAGCucaACGGCGCGGCgcucaacgucuauCCGAUc- -3'
miRNA:   3'- -UGCCGCUCG---UGCCGCGCCG-------------GGCUAag -5'
23919 5' -62 NC_005262.1 + 46659 0.75 0.10223
Target:  5'- aGCGGC-AGCAUGGCGcCGGCaCCGAc-- -3'
miRNA:   3'- -UGCCGcUCGUGCCGC-GCCG-GGCUaag -5'
23919 5' -62 NC_005262.1 + 43821 0.74 0.129972
Target:  5'- cGCGGCGA-CACGGcCGCGGgCCGGc-- -3'
miRNA:   3'- -UGCCGCUcGUGCC-GCGCCgGGCUaag -5'
23919 5' -62 NC_005262.1 + 41296 0.73 0.133101
Target:  5'- -gGGCGAcaucaagGUAUGGCGCGGCgCGAUUg -3'
miRNA:   3'- ugCCGCU-------CGUGCCGCGCCGgGCUAAg -5'
23919 5' -62 NC_005262.1 + 46775 0.73 0.144038
Target:  5'- gGCGGCGAcGCGCGGUaucaacgGCGGCgagCCGAUg- -3'
miRNA:   3'- -UGCCGCU-CGUGCCG-------CGCCG---GGCUAag -5'
23919 5' -62 NC_005262.1 + 45033 0.73 0.144416
Target:  5'- gAUGGCGAGCAuggggaucaaccCGGCgaGCGGCC-GAUUCc -3'
miRNA:   3'- -UGCCGCUCGU------------GCCG--CGCCGGgCUAAG- -5'
23919 5' -62 NC_005262.1 + 5182 0.72 0.160312
Target:  5'- gGCGucGCGGGCGCgGGCGCGGCCgGcg-Cg -3'
miRNA:   3'- -UGC--CGCUCGUG-CCGCGCCGGgCuaaG- -5'
23919 5' -62 NC_005262.1 + 15613 0.72 0.177768
Target:  5'- uGCGGCagGAGCGCaucgaGGCGCGGCUgaaCGcgUCg -3'
miRNA:   3'- -UGCCG--CUCGUG-----CCGCGCCGG---GCuaAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.