miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23919 5' -62 NC_005262.1 + 15996 0.68 0.320797
Target:  5'- uCGGCGuGCA--GCGCGGCaCCGAc-- -3'
miRNA:   3'- uGCCGCuCGUgcCGCGCCG-GGCUaag -5'
23919 5' -62 NC_005262.1 + 8903 0.68 0.320797
Target:  5'- gACGGUccgcucuuggGuGCGCGGCGaaaaGcGCCCGAUUa -3'
miRNA:   3'- -UGCCG----------CuCGUGCCGCg---C-CGGGCUAAg -5'
23919 5' -62 NC_005262.1 + 42149 0.68 0.299007
Target:  5'- cGCGGCGccgGGCcCGGuCGCGG-CCGAUcgUCu -3'
miRNA:   3'- -UGCCGC---UCGuGCC-GCGCCgGGCUA--AG- -5'
23919 5' -62 NC_005262.1 + 48481 0.68 0.292003
Target:  5'- cCGcGUGGGCACGG-GCGGCgCGAc-- -3'
miRNA:   3'- uGC-CGCUCGUGCCgCGCCGgGCUaag -5'
23919 5' -62 NC_005262.1 + 61465 0.69 0.274394
Target:  5'- gACGGCGaAGCGCuagacgacaucuucGCGCGGCCgGAa-- -3'
miRNA:   3'- -UGCCGC-UCGUGc-------------CGCGCCGGgCUaag -5'
23919 5' -62 NC_005262.1 + 33939 0.69 0.274394
Target:  5'- cGCGGCGGGCacGCGGCaagcgaucccggaacGCGGCgUCGAg-- -3'
miRNA:   3'- -UGCCGCUCG--UGCCG---------------CGCCG-GGCUaag -5'
23919 5' -62 NC_005262.1 + 33880 0.69 0.252664
Target:  5'- cGCGcGCGAgacgaucguGCGuCGGCcgGCGGCCCGAUc- -3'
miRNA:   3'- -UGC-CGCU---------CGU-GCCG--CGCCGGGCUAag -5'
23919 5' -62 NC_005262.1 + 20582 0.69 0.252664
Target:  5'- cCGGCGAGCAgcGCGCGGCgCGccgCa -3'
miRNA:   3'- uGCCGCUCGUgcCGCGCCGgGCuaaG- -5'
23919 5' -62 NC_005262.1 + 53817 0.69 0.250816
Target:  5'- aGCGGCacGGGCAucgagcugacgcacCGGCGCGGCgCGGa-- -3'
miRNA:   3'- -UGCCG--CUCGU--------------GCCGCGCCGgGCUaag -5'
23919 5' -62 NC_005262.1 + 8892 0.66 0.410572
Target:  5'- -gGuGCGAGCcgucgaACuGGCGCGGCgCGAUg- -3'
miRNA:   3'- ugC-CGCUCG------UG-CCGCGCCGgGCUAag -5'
23919 5' -62 NC_005262.1 + 57500 0.66 0.401788
Target:  5'- cCGGCGAGCgcaagaagGCGGCGaaGgCCGAg-- -3'
miRNA:   3'- uGCCGCUCG--------UGCCGCgcCgGGCUaag -5'
23919 5' -62 NC_005262.1 + 52334 0.66 0.401788
Target:  5'- cGCGcGCGAGCGCGGUa-GGCaCGAUg- -3'
miRNA:   3'- -UGC-CGCUCGUGCCGcgCCGgGCUAag -5'
23919 5' -62 NC_005262.1 + 50238 0.66 0.401788
Target:  5'- aGCGGaugccaAGCaACGGuCGCGGCCuCGAUg- -3'
miRNA:   3'- -UGCCgc----UCG-UGCC-GCGCCGG-GCUAag -5'
23919 5' -62 NC_005262.1 + 2091 0.66 0.410572
Target:  5'- cGCGcCGAGCGaaccCGGCGCGcCCUGAUcgUCa -3'
miRNA:   3'- -UGCcGCUCGU----GCCGCGCcGGGCUA--AG- -5'
23919 5' -62 NC_005262.1 + 29044 0.66 0.410572
Target:  5'- aGCGGCGccGGCACGacGCGCaccguguucGGCUCGAc-- -3'
miRNA:   3'- -UGCCGC--UCGUGC--CGCG---------CCGGGCUaag -5'
23919 5' -62 NC_005262.1 + 59653 0.66 0.419475
Target:  5'- cACGGCGccaCGCGGCGCcguuuuuuuauGCCCGGcuUUCg -3'
miRNA:   3'- -UGCCGCuc-GUGCCGCGc----------CGGGCU--AAG- -5'
23919 5' -62 NC_005262.1 + 34138 0.66 0.427587
Target:  5'- cUGcGCGGGCGCGG-GCGGCaugccgcucgcugCCGAUg- -3'
miRNA:   3'- uGC-CGCUCGUGCCgCGCCG-------------GGCUAag -5'
23919 5' -62 NC_005262.1 + 7764 0.66 0.428494
Target:  5'- uGCGGCGGGCccuuGCGGuUGCGGaUCgCGGUg- -3'
miRNA:   3'- -UGCCGCUCG----UGCC-GCGCC-GG-GCUAag -5'
23919 5' -62 NC_005262.1 + 22226 0.66 0.428494
Target:  5'- ---uCGAGUACguguugugGGCGUGGCCCGGaUCg -3'
miRNA:   3'- ugccGCUCGUG--------CCGCGCCGGGCUaAG- -5'
23919 5' -62 NC_005262.1 + 35361 1.09 0.000286
Target:  5'- cACGGCGAGCACGGCGCGGCCCGAUUCg -3'
miRNA:   3'- -UGCCGCUCGUGCCGCGCCGGGCUAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.