miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23919 5' -62 NC_005262.1 + 61536 0.66 0.428494
Target:  5'- uUGcGCGGGCcgucauCGaCGCGGCCCGAg-- -3'
miRNA:   3'- uGC-CGCUCGu-----GCcGCGCCGGGCUaag -5'
23919 5' -62 NC_005262.1 + 30929 0.67 0.359704
Target:  5'- cGCGGCGAacgcucggcgccGCAC-GUGCGGgCCGAa-- -3'
miRNA:   3'- -UGCCGCU------------CGUGcCGCGCCgGGCUaag -5'
23919 5' -62 NC_005262.1 + 10464 0.67 0.359704
Target:  5'- uCGGCGAGguaGCGGCGC-GCgCGGUcgcUCg -3'
miRNA:   3'- uGCCGCUCg--UGCCGCGcCGgGCUA---AG- -5'
23919 5' -62 NC_005262.1 + 35361 1.09 0.000286
Target:  5'- cACGGCGAGCACGGCGCGGCCCGAUUCg -3'
miRNA:   3'- -UGCCGCUCGUGCCGCGCCGGGCUAAG- -5'
23919 5' -62 NC_005262.1 + 59653 0.66 0.419475
Target:  5'- cACGGCGccaCGCGGCGCcguuuuuuuauGCCCGGcuUUCg -3'
miRNA:   3'- -UGCCGCuc-GUGCCGCGc----------CGGGCU--AAG- -5'
23919 5' -62 NC_005262.1 + 29044 0.66 0.410572
Target:  5'- aGCGGCGccGGCACGacGCGCaccguguucGGCUCGAc-- -3'
miRNA:   3'- -UGCCGC--UCGUGC--CGCG---------CCGGGCUaag -5'
23919 5' -62 NC_005262.1 + 8892 0.66 0.410572
Target:  5'- -gGuGCGAGCcgucgaACuGGCGCGGCgCGAUg- -3'
miRNA:   3'- ugC-CGCUCG------UG-CCGCGCCGgGCUAag -5'
23919 5' -62 NC_005262.1 + 57500 0.66 0.401788
Target:  5'- cCGGCGAGCgcaagaagGCGGCGaaGgCCGAg-- -3'
miRNA:   3'- uGCCGCUCG--------UGCCGCgcCgGGCUaag -5'
23919 5' -62 NC_005262.1 + 40654 0.66 0.401788
Target:  5'- aGCGguauGCGaAGCGCGGUGCGGCgaaCGGg-- -3'
miRNA:   3'- -UGC----CGC-UCGUGCCGCGCCGg--GCUaag -5'
23919 5' -62 NC_005262.1 + 10075 0.67 0.367048
Target:  5'- cGCGuuCGAGCgccACGGCcuucgacGCGGCCgGGUUCu -3'
miRNA:   3'- -UGCc-GCUCG---UGCCG-------CGCCGGgCUAAG- -5'
23919 5' -62 NC_005262.1 + 29655 0.66 0.387984
Target:  5'- cCGGCGGguagacguagaagauGCGCGGUGCGcGCUCG--UCg -3'
miRNA:   3'- uGCCGCU---------------CGUGCCGCGC-CGGGCuaAG- -5'
23919 5' -62 NC_005262.1 + 50238 0.66 0.401788
Target:  5'- aGCGGaugccaAGCaACGGuCGCGGCCuCGAUg- -3'
miRNA:   3'- -UGCCgc----UCG-UGCC-GCGCCGG-GCUAag -5'
23919 5' -62 NC_005262.1 + 22226 0.66 0.428494
Target:  5'- ---uCGAGUACguguugugGGCGUGGCCCGGaUCg -3'
miRNA:   3'- ugccGCUCGUG--------CCGCGCCGGGCUaAG- -5'
23919 5' -62 NC_005262.1 + 40245 0.66 0.384581
Target:  5'- cGCGGCGGGCGguuggucaguCuGCGCGGUCCu---- -3'
miRNA:   3'- -UGCCGCUCGU----------GcCGCGCCGGGcuaag -5'
23919 5' -62 NC_005262.1 + 7764 0.66 0.428494
Target:  5'- uGCGGCGGGCccuuGCGGuUGCGGaUCgCGGUg- -3'
miRNA:   3'- -UGCCGCUCG----UGCC-GCGCC-GG-GCUAag -5'
23919 5' -62 NC_005262.1 + 52334 0.66 0.401788
Target:  5'- cGCGcGCGAGCGCGGUa-GGCaCGAUg- -3'
miRNA:   3'- -UGC-CGCUCGUGCCGcgCCGgGCUAag -5'
23919 5' -62 NC_005262.1 + 21379 0.67 0.376164
Target:  5'- uGCGGCcGGC-UGGCGCcGCCUGAa-- -3'
miRNA:   3'- -UGCCGcUCGuGCCGCGcCGGGCUaag -5'
23919 5' -62 NC_005262.1 + 53080 0.67 0.359704
Target:  5'- uGCGG-GAGCGcCGGCcgcgugcgcGCGGCCuCGAUc- -3'
miRNA:   3'- -UGCCgCUCGU-GCCG---------CGCCGG-GCUAag -5'
23919 5' -62 NC_005262.1 + 34138 0.66 0.427587
Target:  5'- cUGcGCGGGCGCGG-GCGGCaugccgcucgcugCCGAUg- -3'
miRNA:   3'- uGC-CGCUCGUGCCgCGCCG-------------GGCUAag -5'
23919 5' -62 NC_005262.1 + 2091 0.66 0.410572
Target:  5'- cGCGcCGAGCGaaccCGGCGCGcCCUGAUcgUCa -3'
miRNA:   3'- -UGCcGCUCGU----GCCGCGCcGGGCUA--AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.