miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23919 5' -62 NC_005262.1 + 21843 0.67 0.350868
Target:  5'- -aGGCGcGGCACaaGGCGCGggauuucGCCCGAg-- -3'
miRNA:   3'- ugCCGC-UCGUG--CCGCGC-------CGGGCUaag -5'
23919 5' -62 NC_005262.1 + 10464 0.67 0.359704
Target:  5'- uCGGCGAGguaGCGGCGC-GCgCGGUcgcUCg -3'
miRNA:   3'- uGCCGCUCg--UGCCGCGcCGgGCUA---AG- -5'
23919 5' -62 NC_005262.1 + 50238 0.66 0.401788
Target:  5'- aGCGGaugccaAGCaACGGuCGCGGCCuCGAUg- -3'
miRNA:   3'- -UGCCgc----UCG-UGCC-GCGCCGG-GCUAag -5'
23919 5' -62 NC_005262.1 + 34138 0.66 0.427587
Target:  5'- cUGcGCGGGCGCGG-GCGGCaugccgcucgcugCCGAUg- -3'
miRNA:   3'- uGC-CGCUCGUGCCgCGCCG-------------GGCUAag -5'
23919 5' -62 NC_005262.1 + 20741 0.69 0.271762
Target:  5'- cGCGGC--GCGCGGUGcCGGCCgGGUc- -3'
miRNA:   3'- -UGCCGcuCGUGCCGC-GCCGGgCUAag -5'
23919 5' -62 NC_005262.1 + 41529 0.68 0.32832
Target:  5'- uGCGGgGAcGUAUGGCGaCGGCgUGAUg- -3'
miRNA:   3'- -UGCCgCU-CGUGCCGC-GCCGgGCUAag -5'
23919 5' -62 NC_005262.1 + 30929 0.67 0.359704
Target:  5'- cGCGGCGAacgcucggcgccGCAC-GUGCGGgCCGAa-- -3'
miRNA:   3'- -UGCCGCU------------CGUGcCGCGCCgGGCUaag -5'
23919 5' -62 NC_005262.1 + 7764 0.66 0.428494
Target:  5'- uGCGGCGGGCccuuGCGGuUGCGGaUCgCGGUg- -3'
miRNA:   3'- -UGCCGCUCG----UGCC-GCGCC-GG-GCUAag -5'
23919 5' -62 NC_005262.1 + 41380 0.67 0.335973
Target:  5'- cCGGCGAGCA-GGCG-GcGCUCGAUc- -3'
miRNA:   3'- uGCCGCUCGUgCCGCgC-CGGGCUAag -5'
23919 5' -62 NC_005262.1 + 22226 0.66 0.428494
Target:  5'- ---uCGAGUACguguugugGGCGUGGCCCGGaUCg -3'
miRNA:   3'- ugccGCUCGUG--------CCGCGCCGGGCUaAG- -5'
23919 5' -62 NC_005262.1 + 53080 0.67 0.359704
Target:  5'- uGCGG-GAGCGcCGGCcgcgugcgcGCGGCCuCGAUc- -3'
miRNA:   3'- -UGCCgCUCGU-GCCG---------CGCCGG-GCUAag -5'
23919 5' -62 NC_005262.1 + 38546 0.67 0.343755
Target:  5'- gGCGGCgcagGAGC-CGGCGuUGcGCgCGGUUCg -3'
miRNA:   3'- -UGCCG----CUCGuGCCGC-GC-CGgGCUAAG- -5'
23919 5' -62 NC_005262.1 + 40245 0.66 0.384581
Target:  5'- cGCGGCGGGCGguuggucaguCuGCGCGGUCCu---- -3'
miRNA:   3'- -UGCCGCUCGU----------GcCGCGCCGGGcuaag -5'
23919 5' -62 NC_005262.1 + 40654 0.66 0.401788
Target:  5'- aGCGguauGCGaAGCGCGGUGCGGCgaaCGGg-- -3'
miRNA:   3'- -UGC----CGC-UCGUGCCGCGCCGg--GCUaag -5'
23919 5' -62 NC_005262.1 + 8892 0.66 0.410572
Target:  5'- -gGuGCGAGCcgucgaACuGGCGCGGCgCGAUg- -3'
miRNA:   3'- ugC-CGCUCG------UG-CCGCGCCGgGCUAag -5'
23919 5' -62 NC_005262.1 + 59653 0.66 0.419475
Target:  5'- cACGGCGccaCGCGGCGCcguuuuuuuauGCCCGGcuUUCg -3'
miRNA:   3'- -UGCCGCuc-GUGCCGCGc----------CGGGCU--AAG- -5'
23919 5' -62 NC_005262.1 + 17359 0.69 0.258904
Target:  5'- cCGGCGcgggcGGCGCGGCG-GGCCCc---- -3'
miRNA:   3'- uGCCGC-----UCGUGCCGCgCCGGGcuaag -5'
23919 5' -62 NC_005262.1 + 13478 0.69 0.271762
Target:  5'- cGCGGCGGGCgcuGCGGC-CGGCUCc---- -3'
miRNA:   3'- -UGCCGCUCG---UGCCGcGCCGGGcuaag -5'
23919 5' -62 NC_005262.1 + 21548 0.68 0.306141
Target:  5'- cGCaGUGAGCGCGGCGCucGGCaUCGGa-- -3'
miRNA:   3'- -UGcCGCUCGUGCCGCG--CCG-GGCUaag -5'
23919 5' -62 NC_005262.1 + 28132 0.68 0.313404
Target:  5'- gAC-GUGAGCACGaGCuGCGGCaCCGAg-- -3'
miRNA:   3'- -UGcCGCUCGUGC-CG-CGCCG-GGCUaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.