miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23919 5' -62 NC_005262.1 + 12732 0.7 0.234683
Target:  5'- cGCGGCGAGCACcugauGGUGCccgucgaugauGuGCCCGucGUUCg -3'
miRNA:   3'- -UGCCGCUCGUG-----CCGCG-----------C-CGGGC--UAAG- -5'
23919 5' -62 NC_005262.1 + 15235 0.68 0.313404
Target:  5'- -gGGuCGAGCACcuuGuaGCGGCCCGGcUCc -3'
miRNA:   3'- ugCC-GCUCGUG---CcgCGCCGGGCUaAG- -5'
23919 5' -62 NC_005262.1 + 40245 0.66 0.384581
Target:  5'- cGCGGCGGGCGguuggucaguCuGCGCGGUCCu---- -3'
miRNA:   3'- -UGCCGCUCGU----------GcCGCGCCGGGcuaag -5'
23919 5' -62 NC_005262.1 + 14053 0.7 0.246547
Target:  5'- -gGGCGccgccGGCGuCGGUGCGGCuucggccgCCGGUUCg -3'
miRNA:   3'- ugCCGC-----UCGU-GCCGCGCCG--------GGCUAAG- -5'
23919 5' -62 NC_005262.1 + 29655 0.66 0.387984
Target:  5'- cCGGCGGguagacguagaagauGCGCGGUGCGcGCUCG--UCg -3'
miRNA:   3'- uGCCGCU---------------CGUGCCGCGC-CGGGCuaAG- -5'
23919 5' -62 NC_005262.1 + 52385 0.75 0.107868
Target:  5'- uCGGCG-GCcCGGCGCGGCgCGGcUUCg -3'
miRNA:   3'- uGCCGCuCGuGCCGCGCCGgGCU-AAG- -5'
23919 5' -62 NC_005262.1 + 10075 0.67 0.367048
Target:  5'- cGCGuuCGAGCgccACGGCcuucgacGCGGCCgGGUUCu -3'
miRNA:   3'- -UGCc-GCUCG---UGCCG-------CGCCGGgCUAAG- -5'
23919 5' -62 NC_005262.1 + 4661 0.75 0.107868
Target:  5'- cGCGGCGA-CGCGGCcCGGC-CGGUUCg -3'
miRNA:   3'- -UGCCGCUcGUGCCGcGCCGgGCUAAG- -5'
23919 5' -62 NC_005262.1 + 14016 0.74 0.123261
Target:  5'- -gGGCGuccGGCGCGGCaGCGGCCgGAgccUCg -3'
miRNA:   3'- ugCCGC---UCGUGCCG-CGCCGGgCUa--AG- -5'
23919 5' -62 NC_005262.1 + 33163 0.72 0.160312
Target:  5'- cGCGGgcaccuugcCGAGCGuCGGCgGCGGCUCGAUcuUCg -3'
miRNA:   3'- -UGCC---------GCUCGU-GCCG-CGCCGGGCUA--AG- -5'
23919 5' -62 NC_005262.1 + 8145 0.72 0.168838
Target:  5'- cCGGCGuGC-CGGaCGCGGCCaCGAg-- -3'
miRNA:   3'- uGCCGCuCGuGCC-GCGCCGG-GCUaag -5'
23919 5' -62 NC_005262.1 + 29775 0.71 0.187116
Target:  5'- cGCGGC--GCACGaUGCGGCCCGGcgUCa -3'
miRNA:   3'- -UGCCGcuCGUGCcGCGCCGGGCUa-AG- -5'
23919 5' -62 NC_005262.1 + 12431 0.7 0.21779
Target:  5'- cCGGCGucGCggACGGCGCGGUgCCGAg-- -3'
miRNA:   3'- uGCCGCu-CG--UGCCGCGCCG-GGCUaag -5'
23919 5' -62 NC_005262.1 + 16980 0.69 0.252664
Target:  5'- uCGGCGAGCGC-GCG-GGCCUGcacgUCg -3'
miRNA:   3'- uGCCGCUCGUGcCGCgCCGGGCua--AG- -5'
23919 5' -62 NC_005262.1 + 17359 0.69 0.258904
Target:  5'- cCGGCGcgggcGGCGCGGCG-GGCCCc---- -3'
miRNA:   3'- uGCCGC-----UCGUGCCGCgCCGGGcuaag -5'
23919 5' -62 NC_005262.1 + 20741 0.69 0.271762
Target:  5'- cGCGGC--GCGCGGUGcCGGCCgGGUc- -3'
miRNA:   3'- -UGCCGcuCGUGCCGC-GCCGGgCUAag -5'
23919 5' -62 NC_005262.1 + 21548 0.68 0.306141
Target:  5'- cGCaGUGAGCGCGGCGCucGGCaUCGGa-- -3'
miRNA:   3'- -UGcCGCUCGUGCCGCG--CCG-GGCUaag -5'
23919 5' -62 NC_005262.1 + 41380 0.67 0.335973
Target:  5'- cCGGCGAGCA-GGCG-GcGCUCGAUc- -3'
miRNA:   3'- uGCCGCUCGUgCCGCgC-CGGGCUAag -5'
23919 5' -62 NC_005262.1 + 38546 0.67 0.343755
Target:  5'- gGCGGCgcagGAGC-CGGCGuUGcGCgCGGUUCg -3'
miRNA:   3'- -UGCCG----CUCGuGCCGC-GC-CGgGCUAAG- -5'
23919 5' -62 NC_005262.1 + 10464 0.67 0.359704
Target:  5'- uCGGCGAGguaGCGGCGC-GCgCGGUcgcUCg -3'
miRNA:   3'- uGCCGCUCg--UGCCGCGcCGgGCUA---AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.