miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2392 5' -47.6 NC_001416.1 + 5386 0.67 0.962027
Target:  5'- ------aUUCGCCCUCcuGAGAGAcGGg -3'
miRNA:   3'- ccuaauaAAGUGGGAGu-CUCUCU-CCg -5'
2392 5' -47.6 NC_001416.1 + 7292 0.67 0.965833
Target:  5'- -aGUUG-UUCACCCagcgagCGGAGAcGGGCa -3'
miRNA:   3'- ccUAAUaAAGUGGGa-----GUCUCUcUCCG- -5'
2392 5' -47.6 NC_001416.1 + 33064 0.66 0.975627
Target:  5'- -------cUCGCCCgugaAGAGAaaGAGGCa -3'
miRNA:   3'- ccuaauaaAGUGGGag--UCUCU--CUCCG- -5'
2392 5' -47.6 NC_001416.1 + 46293 1.16 0.002117
Target:  5'- gGGAUUAUUUCACCCUCAGAGAGAGGCu -3'
miRNA:   3'- -CCUAAUAAAGUGGGAGUCUCUCUCCG- -5'
2392 5' -47.6 NC_001416.1 + 46334 0.72 0.771846
Target:  5'- cGGUg---UCugCCagUCGGGGGGAGGCu -3'
miRNA:   3'- cCUAauaaAGugGG--AGUCUCUCUCCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.