miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23920 3' -54.5 NC_005262.1 + 32929 0.66 0.778776
Target:  5'- ---gGCCG-CCGGCGACuCCUcgGCCGu- -3'
miRNA:   3'- cuuaCGGCaGGCUGUUG-GGA--CGGUua -5'
23920 3' -54.5 NC_005262.1 + 963 0.66 0.778776
Target:  5'- ---cGUCaUCCGuCAGcCCCUGCCGAg -3'
miRNA:   3'- cuuaCGGcAGGCuGUU-GGGACGGUUa -5'
23920 3' -54.5 NC_005262.1 + 131 0.66 0.768608
Target:  5'- ---cGCCGUcgCCGGCAAUuCCaGCCAGUu -3'
miRNA:   3'- cuuaCGGCA--GGCUGUUG-GGaCGGUUA- -5'
23920 3' -54.5 NC_005262.1 + 38412 0.66 0.768608
Target:  5'- ---gGCCGUCUccCGAUCCUGCgCGAUg -3'
miRNA:   3'- cuuaCGGCAGGcuGUUGGGACG-GUUA- -5'
23920 3' -54.5 NC_005262.1 + 10793 0.66 0.758296
Target:  5'- -cAUGCUGUCgGGCAucaGCCCcuugaacagGCCGAUa -3'
miRNA:   3'- cuUACGGCAGgCUGU---UGGGa--------CGGUUA- -5'
23920 3' -54.5 NC_005262.1 + 22973 0.66 0.758296
Target:  5'- uGAAUGCUGaugcCCGucGCAGCCCcguagaUGCCGAUc -3'
miRNA:   3'- -CUUACGGCa---GGC--UGUUGGG------ACGGUUA- -5'
23920 3' -54.5 NC_005262.1 + 21179 0.66 0.737288
Target:  5'- -cAUGCCGUUCGGCAGCgagauaagGCCGGUc -3'
miRNA:   3'- cuUACGGCAGGCUGUUGgga-----CGGUUA- -5'
23920 3' -54.5 NC_005262.1 + 33120 0.66 0.737288
Target:  5'- cGAGcGCCGUCCaGCGuCCgCUGUCGAUg -3'
miRNA:   3'- -CUUaCGGCAGGcUGUuGG-GACGGUUA- -5'
23920 3' -54.5 NC_005262.1 + 46051 0.66 0.737288
Target:  5'- -cGUGUCGUCCGcccGCuucACCgUGCCGAc -3'
miRNA:   3'- cuUACGGCAGGC---UGu--UGGgACGGUUa -5'
23920 3' -54.5 NC_005262.1 + 22838 0.66 0.726616
Target:  5'- ---cGCCGUuguUCGACAGCCUgagcGCCAu- -3'
miRNA:   3'- cuuaCGGCA---GGCUGUUGGGa---CGGUua -5'
23920 3' -54.5 NC_005262.1 + 22443 0.67 0.715848
Target:  5'- -cGUGCCGUCCG-CGAgC-UGCCAu- -3'
miRNA:   3'- cuUACGGCAGGCuGUUgGgACGGUua -5'
23920 3' -54.5 NC_005262.1 + 46465 0.67 0.704995
Target:  5'- cGAAUGCCGcgCCGgccacgacGCAGCCC-GUCGAc -3'
miRNA:   3'- -CUUACGGCa-GGC--------UGUUGGGaCGGUUa -5'
23920 3' -54.5 NC_005262.1 + 46672 0.67 0.704995
Target:  5'- ---cGCCGgcaCCGAC-GCCC-GCCGAUg -3'
miRNA:   3'- cuuaCGGCa--GGCUGuUGGGaCGGUUA- -5'
23920 3' -54.5 NC_005262.1 + 16970 0.67 0.694069
Target:  5'- ---aGCCGggcaCCGAUAuuGCCCUGCUg-- -3'
miRNA:   3'- cuuaCGGCa---GGCUGU--UGGGACGGuua -5'
23920 3' -54.5 NC_005262.1 + 23444 0.68 0.660972
Target:  5'- ---aGCCGUCCGACGACUg-GCgCAu- -3'
miRNA:   3'- cuuaCGGCAGGCUGUUGGgaCG-GUua -5'
23920 3' -54.5 NC_005262.1 + 33780 0.68 0.64987
Target:  5'- ---cGUCGUCCGACu-UCUUGCCAu- -3'
miRNA:   3'- cuuaCGGCAGGCUGuuGGGACGGUua -5'
23920 3' -54.5 NC_005262.1 + 3599 0.68 0.627626
Target:  5'- ---cGCCGgCCGGCu-CCUUGCCGGUu -3'
miRNA:   3'- cuuaCGGCaGGCUGuuGGGACGGUUA- -5'
23920 3' -54.5 NC_005262.1 + 28540 0.68 0.616505
Target:  5'- -cGUGCCGUUCGccgggggcgccCAGCCgCUGCCGAUc -3'
miRNA:   3'- cuUACGGCAGGCu----------GUUGG-GACGGUUA- -5'
23920 3' -54.5 NC_005262.1 + 3405 0.69 0.550395
Target:  5'- -cAUGCCG-CCGACGAUCUUGCg--- -3'
miRNA:   3'- cuUACGGCaGGCUGUUGGGACGguua -5'
23920 3' -54.5 NC_005262.1 + 61629 0.7 0.536323
Target:  5'- ---aGCCGUCCGACAauagccgcgcugauGCgCUGaCCGAUg -3'
miRNA:   3'- cuuaCGGCAGGCUGU--------------UGgGAC-GGUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.