Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23920 | 3' | -54.5 | NC_005262.1 | + | 51372 | 0.72 | 0.39822 |
Target: 5'- ---cGCCGUCCG-CGACgCCgGCCAAg -3' miRNA: 3'- cuuaCGGCAGGCuGUUG-GGaCGGUUa -5' |
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23920 | 3' | -54.5 | NC_005262.1 | + | 963 | 0.66 | 0.778776 |
Target: 5'- ---cGUCaUCCGuCAGcCCCUGCCGAg -3' miRNA: 3'- cuuaCGGcAGGCuGUU-GGGACGGUUa -5' |
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23920 | 3' | -54.5 | NC_005262.1 | + | 46465 | 0.67 | 0.704995 |
Target: 5'- cGAAUGCCGcgCCGgccacgacGCAGCCC-GUCGAc -3' miRNA: 3'- -CUUACGGCa-GGC--------UGUUGGGaCGGUUa -5' |
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23920 | 3' | -54.5 | NC_005262.1 | + | 46672 | 0.67 | 0.704995 |
Target: 5'- ---cGCCGgcaCCGAC-GCCC-GCCGAUg -3' miRNA: 3'- cuuaCGGCa--GGCUGuUGGGaCGGUUA- -5' |
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23920 | 3' | -54.5 | NC_005262.1 | + | 16970 | 0.67 | 0.694069 |
Target: 5'- ---aGCCGggcaCCGAUAuuGCCCUGCUg-- -3' miRNA: 3'- cuuaCGGCa---GGCUGU--UGGGACGGuua -5' |
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23920 | 3' | -54.5 | NC_005262.1 | + | 23444 | 0.68 | 0.660972 |
Target: 5'- ---aGCCGUCCGACGACUg-GCgCAu- -3' miRNA: 3'- cuuaCGGCAGGCUGUUGGgaCG-GUua -5' |
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23920 | 3' | -54.5 | NC_005262.1 | + | 33359 | 0.71 | 0.486618 |
Target: 5'- ---cGCCGaUCGACAACCCgccgGCCGu- -3' miRNA: 3'- cuuaCGGCaGGCUGUUGGGa---CGGUua -5' |
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23920 | 3' | -54.5 | NC_005262.1 | + | 24842 | 0.72 | 0.426556 |
Target: 5'- ---cGCCGUgCCGAUcACCCUgcGCCAGUg -3' miRNA: 3'- cuuaCGGCA-GGCUGuUGGGA--CGGUUA- -5' |
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23920 | 3' | -54.5 | NC_005262.1 | + | 3599 | 0.68 | 0.627626 |
Target: 5'- ---cGCCGgCCGGCu-CCUUGCCGGUu -3' miRNA: 3'- cuuaCGGCaGGCUGuuGGGACGGUUA- -5' |
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23920 | 3' | -54.5 | NC_005262.1 | + | 33780 | 0.68 | 0.64987 |
Target: 5'- ---cGUCGUCCGACu-UCUUGCCAu- -3' miRNA: 3'- cuuaCGGCAGGCUGuuGGGACGGUua -5' |
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23920 | 3' | -54.5 | NC_005262.1 | + | 22443 | 0.67 | 0.715848 |
Target: 5'- -cGUGCCGUCCG-CGAgC-UGCCAu- -3' miRNA: 3'- cuUACGGCAGGCuGUUgGgACGGUua -5' |
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23920 | 3' | -54.5 | NC_005262.1 | + | 22838 | 0.66 | 0.726616 |
Target: 5'- ---cGCCGUuguUCGACAGCCUgagcGCCAu- -3' miRNA: 3'- cuuaCGGCA---GGCUGUUGGGa---CGGUua -5' |
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23920 | 3' | -54.5 | NC_005262.1 | + | 21179 | 0.66 | 0.737288 |
Target: 5'- -cAUGCCGUUCGGCAGCgagauaagGCCGGUc -3' miRNA: 3'- cuUACGGCAGGCUGUUGgga-----CGGUUA- -5' |
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23920 | 3' | -54.5 | NC_005262.1 | + | 33120 | 0.66 | 0.737288 |
Target: 5'- cGAGcGCCGUCCaGCGuCCgCUGUCGAUg -3' miRNA: 3'- -CUUaCGGCAGGcUGUuGG-GACGGUUA- -5' |
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23920 | 3' | -54.5 | NC_005262.1 | + | 46051 | 0.66 | 0.737288 |
Target: 5'- -cGUGUCGUCCGcccGCuucACCgUGCCGAc -3' miRNA: 3'- cuUACGGCAGGC---UGu--UGGgACGGUUa -5' |
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23920 | 3' | -54.5 | NC_005262.1 | + | 10793 | 0.66 | 0.758296 |
Target: 5'- -cAUGCUGUCgGGCAucaGCCCcuugaacagGCCGAUa -3' miRNA: 3'- cuUACGGCAGgCUGU---UGGGa--------CGGUUA- -5' |
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23920 | 3' | -54.5 | NC_005262.1 | + | 22973 | 0.66 | 0.758296 |
Target: 5'- uGAAUGCUGaugcCCGucGCAGCCCcguagaUGCCGAUc -3' miRNA: 3'- -CUUACGGCa---GGC--UGUUGGG------ACGGUUA- -5' |
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23920 | 3' | -54.5 | NC_005262.1 | + | 38412 | 0.66 | 0.768608 |
Target: 5'- ---gGCCGUCUccCGAUCCUGCgCGAUg -3' miRNA: 3'- cuuaCGGCAGGcuGUUGGGACG-GUUA- -5' |
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23920 | 3' | -54.5 | NC_005262.1 | + | 131 | 0.66 | 0.768608 |
Target: 5'- ---cGCCGUcgCCGGCAAUuCCaGCCAGUu -3' miRNA: 3'- cuuaCGGCA--GGCUGUUG-GGaCGGUUA- -5' |
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23920 | 3' | -54.5 | NC_005262.1 | + | 34217 | 1.05 | 0.002194 |
Target: 5'- aGAAUGCCGUCCGACAACCCUGCCAAUu -3' miRNA: 3'- -CUUACGGCAGGCUGUUGGGACGGUUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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