miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23920 5' -58 NC_005262.1 + 4103 0.66 0.639537
Target:  5'- gCGccCGC-GUGGCGGCAcgCCGaUCGUc -3'
miRNA:   3'- -GCuaGCGuCACCGCCGUa-GGC-AGCGu -5'
23920 5' -58 NC_005262.1 + 15278 0.66 0.633127
Target:  5'- gCGAUUGCAGgucGagcgcgcuguuaccuGCGGCugCCGUCGCGc -3'
miRNA:   3'- -GCUAGCGUCa--C---------------CGCCGuaGGCAGCGU- -5'
23920 5' -58 NC_005262.1 + 17183 0.66 0.628854
Target:  5'- -cAUCGCGucgGGCGGgAUCUGUgGCGu -3'
miRNA:   3'- gcUAGCGUca-CCGCCgUAGGCAgCGU- -5'
23920 5' -58 NC_005262.1 + 40240 0.66 0.628854
Target:  5'- cCGcgCGCGGcgGGCGGUuggucaGUCUG-CGCGg -3'
miRNA:   3'- -GCuaGCGUCa-CCGCCG------UAGGCaGCGU- -5'
23920 5' -58 NC_005262.1 + 36233 0.66 0.618175
Target:  5'- --cUCGCGcUGcGCGGCGUCC-UCGCc -3'
miRNA:   3'- gcuAGCGUcAC-CGCCGUAGGcAGCGu -5'
23920 5' -58 NC_005262.1 + 11902 0.66 0.607507
Target:  5'- gCGGUCGguGccguucGGCGGCGUCgGcucggucgugcUCGCGu -3'
miRNA:   3'- -GCUAGCguCa-----CCGCCGUAGgC-----------AGCGU- -5'
23920 5' -58 NC_005262.1 + 33913 0.66 0.607507
Target:  5'- cCGAUCgGUAGcGGCGGUG-CCGagcUCGCGg -3'
miRNA:   3'- -GCUAG-CGUCaCCGCCGUaGGC---AGCGU- -5'
23920 5' -58 NC_005262.1 + 5167 0.66 0.596859
Target:  5'- uGAUCGguGacGGcCGGCGUCgCGggCGCGg -3'
miRNA:   3'- gCUAGCguCa-CC-GCCGUAG-GCa-GCGU- -5'
23920 5' -58 NC_005262.1 + 4689 0.66 0.596859
Target:  5'- gGAUCG-GGccGCGGCAUCCaGUCGUu -3'
miRNA:   3'- gCUAGCgUCacCGCCGUAGG-CAGCGu -5'
23920 5' -58 NC_005262.1 + 13994 0.66 0.595795
Target:  5'- cCGAUCGggccggaCGGUGcaGgGGCGUCCGgCGCGg -3'
miRNA:   3'- -GCUAGC-------GUCAC--CgCCGUAGGCaGCGU- -5'
23920 5' -58 NC_005262.1 + 55644 0.66 0.586239
Target:  5'- cCGcgCGCucGUGGCcGCGUCCGgcaCGCc -3'
miRNA:   3'- -GCuaGCGu-CACCGcCGUAGGCa--GCGu -5'
23920 5' -58 NC_005262.1 + 5230 0.66 0.586239
Target:  5'- aCGAUCGCcGUGGCGuCGacgCCG-CGCu -3'
miRNA:   3'- -GCUAGCGuCACCGCcGUa--GGCaGCGu -5'
23920 5' -58 NC_005262.1 + 24987 0.66 0.586239
Target:  5'- uGGUCGa---GGCGGCAUUCGagCGCGg -3'
miRNA:   3'- gCUAGCgucaCCGCCGUAGGCa-GCGU- -5'
23920 5' -58 NC_005262.1 + 17545 0.67 0.575655
Target:  5'- gCGGUCGCGcgcgaGGCGGCAgCCGcggcggCGCGc -3'
miRNA:   3'- -GCUAGCGUca---CCGCCGUaGGCa-----GCGU- -5'
23920 5' -58 NC_005262.1 + 12533 0.67 0.575655
Target:  5'- gCGAUCGCcuccauGUugcGGCGGCAg--GUCGCGg -3'
miRNA:   3'- -GCUAGCGu-----CA---CCGCCGUaggCAGCGU- -5'
23920 5' -58 NC_005262.1 + 52809 0.67 0.575655
Target:  5'- gGAuUCGCAGUGGCaGGCGcUCGgcgaGCGg -3'
miRNA:   3'- gCU-AGCGUCACCG-CCGUaGGCag--CGU- -5'
23920 5' -58 NC_005262.1 + 27659 0.67 0.544196
Target:  5'- uCGAUCGCGcUGGCGGUgcucgccucgCCGUaucgCGCAg -3'
miRNA:   3'- -GCUAGCGUcACCGCCGua--------GGCA----GCGU- -5'
23920 5' -58 NC_005262.1 + 29475 0.67 0.53383
Target:  5'- uGAUagUGCAG-GGCGGCGaccgugCCGuUCGCGa -3'
miRNA:   3'- gCUA--GCGUCaCCGCCGUa-----GGC-AGCGU- -5'
23920 5' -58 NC_005262.1 + 43472 0.68 0.48318
Target:  5'- uCGAgcCGCuucGUGGCGGCGaCCGUcuaCGCGg -3'
miRNA:   3'- -GCUa-GCGu--CACCGCCGUaGGCA---GCGU- -5'
23920 5' -58 NC_005262.1 + 55938 0.68 0.48318
Target:  5'- gCGAUCG-AG-GGCGGCggCCGUCa-- -3'
miRNA:   3'- -GCUAGCgUCaCCGCCGuaGGCAGcgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.