Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23920 | 5' | -58 | NC_005262.1 | + | 4103 | 0.66 | 0.639537 |
Target: 5'- gCGccCGC-GUGGCGGCAcgCCGaUCGUc -3' miRNA: 3'- -GCuaGCGuCACCGCCGUa-GGC-AGCGu -5' |
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23920 | 5' | -58 | NC_005262.1 | + | 4689 | 0.66 | 0.596859 |
Target: 5'- gGAUCG-GGccGCGGCAUCCaGUCGUu -3' miRNA: 3'- gCUAGCgUCacCGCCGUAGG-CAGCGu -5' |
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23920 | 5' | -58 | NC_005262.1 | + | 5167 | 0.66 | 0.596859 |
Target: 5'- uGAUCGguGacGGcCGGCGUCgCGggCGCGg -3' miRNA: 3'- gCUAGCguCa-CC-GCCGUAG-GCa-GCGU- -5' |
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23920 | 5' | -58 | NC_005262.1 | + | 5230 | 0.66 | 0.586239 |
Target: 5'- aCGAUCGCcGUGGCGuCGacgCCG-CGCu -3' miRNA: 3'- -GCUAGCGuCACCGCcGUa--GGCaGCGu -5' |
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23920 | 5' | -58 | NC_005262.1 | + | 11902 | 0.66 | 0.607507 |
Target: 5'- gCGGUCGguGccguucGGCGGCGUCgGcucggucgugcUCGCGu -3' miRNA: 3'- -GCUAGCguCa-----CCGCCGUAGgC-----------AGCGU- -5' |
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23920 | 5' | -58 | NC_005262.1 | + | 12533 | 0.67 | 0.575655 |
Target: 5'- gCGAUCGCcuccauGUugcGGCGGCAg--GUCGCGg -3' miRNA: 3'- -GCUAGCGu-----CA---CCGCCGUaggCAGCGU- -5' |
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23920 | 5' | -58 | NC_005262.1 | + | 13994 | 0.66 | 0.595795 |
Target: 5'- cCGAUCGggccggaCGGUGcaGgGGCGUCCGgCGCGg -3' miRNA: 3'- -GCUAGC-------GUCAC--CgCCGUAGGCaGCGU- -5' |
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23920 | 5' | -58 | NC_005262.1 | + | 15278 | 0.66 | 0.633127 |
Target: 5'- gCGAUUGCAGgucGagcgcgcuguuaccuGCGGCugCCGUCGCGc -3' miRNA: 3'- -GCUAGCGUCa--C---------------CGCCGuaGGCAGCGU- -5' |
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23920 | 5' | -58 | NC_005262.1 | + | 17183 | 0.66 | 0.628854 |
Target: 5'- -cAUCGCGucgGGCGGgAUCUGUgGCGu -3' miRNA: 3'- gcUAGCGUca-CCGCCgUAGGCAgCGU- -5' |
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23920 | 5' | -58 | NC_005262.1 | + | 17545 | 0.67 | 0.575655 |
Target: 5'- gCGGUCGCGcgcgaGGCGGCAgCCGcggcggCGCGc -3' miRNA: 3'- -GCUAGCGUca---CCGCCGUaGGCa-----GCGU- -5' |
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23920 | 5' | -58 | NC_005262.1 | + | 19428 | 0.68 | 0.473323 |
Target: 5'- ---cCGCAGUcGCGGCAUCUGaagCGCu -3' miRNA: 3'- gcuaGCGUCAcCGCCGUAGGCa--GCGu -5' |
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23920 | 5' | -58 | NC_005262.1 | + | 21021 | 0.71 | 0.331615 |
Target: 5'- aCGAU-GUAG-GGCuGGcCGUCCGUCGCGa -3' miRNA: 3'- -GCUAgCGUCaCCG-CC-GUAGGCAGCGU- -5' |
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23920 | 5' | -58 | NC_005262.1 | + | 24547 | 0.71 | 0.345105 |
Target: 5'- gCGAUCGCc--GGCGugauccugcugaucGCGUCCGUCGCc -3' miRNA: 3'- -GCUAGCGucaCCGC--------------CGUAGGCAGCGu -5' |
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23920 | 5' | -58 | NC_005262.1 | + | 24987 | 0.66 | 0.586239 |
Target: 5'- uGGUCGa---GGCGGCAUUCGagCGCGg -3' miRNA: 3'- gCUAGCgucaCCGCCGUAGGCa-GCGU- -5' |
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23920 | 5' | -58 | NC_005262.1 | + | 26883 | 0.69 | 0.444383 |
Target: 5'- aCGAUCG-AGUGGgcCGGCGcgUCCGUUGUc -3' miRNA: 3'- -GCUAGCgUCACC--GCCGU--AGGCAGCGu -5' |
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23920 | 5' | -58 | NC_005262.1 | + | 27659 | 0.67 | 0.544196 |
Target: 5'- uCGAUCGCGcUGGCGGUgcucgccucgCCGUaucgCGCAg -3' miRNA: 3'- -GCUAGCGUcACCGCCGua--------GGCA----GCGU- -5' |
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23920 | 5' | -58 | NC_005262.1 | + | 29475 | 0.67 | 0.53383 |
Target: 5'- uGAUagUGCAG-GGCGGCGaccgugCCGuUCGCGa -3' miRNA: 3'- gCUA--GCGUCaCCGCCGUa-----GGC-AGCGU- -5' |
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23920 | 5' | -58 | NC_005262.1 | + | 33151 | 0.68 | 0.473323 |
Target: 5'- -cGUCGUAagGGCGGCA-CCGUCGUc -3' miRNA: 3'- gcUAGCGUcaCCGCCGUaGGCAGCGu -5' |
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23920 | 5' | -58 | NC_005262.1 | + | 33686 | 0.68 | 0.473323 |
Target: 5'- aCGAUCGUGGgcuucgcGGCGGCcggcgugUCGUCGCc -3' miRNA: 3'- -GCUAGCGUCa------CCGCCGua-----GGCAGCGu -5' |
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23920 | 5' | -58 | NC_005262.1 | + | 33913 | 0.66 | 0.607507 |
Target: 5'- cCGAUCgGUAGcGGCGGUG-CCGagcUCGCGg -3' miRNA: 3'- -GCUAG-CGUCaCCGCCGUaGGC---AGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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