miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23920 5' -58 NC_005262.1 + 34133 0.72 0.273395
Target:  5'- gCGGgcugCGCGGgcgcgGGCGGCAUgCCGcUCGCu -3'
miRNA:   3'- -GCUa---GCGUCa----CCGCCGUA-GGC-AGCGu -5'
23920 5' -58 NC_005262.1 + 34256 1.08 0.000783
Target:  5'- gCGAUCGCAGUGGCGGCAUCCGUCGCAu -3'
miRNA:   3'- -GCUAGCGUCACCGCCGUAGGCAGCGU- -5'
23920 5' -58 NC_005262.1 + 36233 0.66 0.618175
Target:  5'- --cUCGCGcUGcGCGGCGUCC-UCGCc -3'
miRNA:   3'- gcuAGCGUcAC-CGCCGUAGGcAGCGu -5'
23920 5' -58 NC_005262.1 + 36859 0.71 0.323864
Target:  5'- uGGUCGCGGauaGGCGGCGaaUCCGgcucgggaucgUCGCGc -3'
miRNA:   3'- gCUAGCGUCa--CCGCCGU--AGGC-----------AGCGU- -5'
23920 5' -58 NC_005262.1 + 38542 0.72 0.273395
Target:  5'- aCGGUCGCGGUGacgauCGGCA-CCGcCGCGg -3'
miRNA:   3'- -GCUAGCGUCACc----GCCGUaGGCaGCGU- -5'
23920 5' -58 NC_005262.1 + 39496 0.68 0.48318
Target:  5'- gCGAgaaGCAucagGGCGGCGagCGUCGCGc -3'
miRNA:   3'- -GCUag-CGUca--CCGCCGUagGCAGCGU- -5'
23920 5' -58 NC_005262.1 + 40240 0.66 0.628854
Target:  5'- cCGcgCGCGGcgGGCGGUuggucaGUCUG-CGCGg -3'
miRNA:   3'- -GCuaGCGUCa-CCGCCG------UAGGCaGCGU- -5'
23920 5' -58 NC_005262.1 + 43472 0.68 0.48318
Target:  5'- uCGAgcCGCuucGUGGCGGCGaCCGUcuaCGCGg -3'
miRNA:   3'- -GCUa-GCGu--CACCGCCGUaGGCA---GCGU- -5'
23920 5' -58 NC_005262.1 + 50823 0.73 0.249991
Target:  5'- gGGUCGCGGUcgucgacgccgagccGGuCGGCGaugCCGUCGCGc -3'
miRNA:   3'- gCUAGCGUCA---------------CC-GCCGUa--GGCAGCGU- -5'
23920 5' -58 NC_005262.1 + 51280 0.71 0.323864
Target:  5'- gCGAUCGCGucGcGCGGCAUCUGaagCGCGg -3'
miRNA:   3'- -GCUAGCGUcaC-CGCCGUAGGCa--GCGU- -5'
23920 5' -58 NC_005262.1 + 52809 0.67 0.575655
Target:  5'- gGAuUCGCAGUGGCaGGCGcUCGgcgaGCGg -3'
miRNA:   3'- gCU-AGCGUCACCG-CCGUaGGCag--CGU- -5'
23920 5' -58 NC_005262.1 + 55644 0.66 0.586239
Target:  5'- cCGcgCGCucGUGGCcGCGUCCGgcaCGCc -3'
miRNA:   3'- -GCuaGCGu-CACCGcCGUAGGCa--GCGu -5'
23920 5' -58 NC_005262.1 + 55938 0.68 0.48318
Target:  5'- gCGAUCG-AG-GGCGGCggCCGUCa-- -3'
miRNA:   3'- -GCUAGCgUCaCCGCCGuaGGCAGcgu -5'
23920 5' -58 NC_005262.1 + 56522 0.7 0.38964
Target:  5'- gGAcgCGCcGUGGUucccGGCAUCCGUCGa- -3'
miRNA:   3'- gCUa-GCGuCACCG----CCGUAGGCAGCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.