Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23920 | 5' | -58 | NC_005262.1 | + | 56522 | 0.7 | 0.38964 |
Target: 5'- gGAcgCGCcGUGGUucccGGCAUCCGUCGa- -3' miRNA: 3'- gCUa-GCGuCACCG----CCGUAGGCAGCgu -5' |
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23920 | 5' | -58 | NC_005262.1 | + | 55938 | 0.68 | 0.48318 |
Target: 5'- gCGAUCG-AG-GGCGGCggCCGUCa-- -3' miRNA: 3'- -GCUAGCgUCaCCGCCGuaGGCAGcgu -5' |
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23920 | 5' | -58 | NC_005262.1 | + | 55644 | 0.66 | 0.586239 |
Target: 5'- cCGcgCGCucGUGGCcGCGUCCGgcaCGCc -3' miRNA: 3'- -GCuaGCGu-CACCGcCGUAGGCa--GCGu -5' |
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23920 | 5' | -58 | NC_005262.1 | + | 52809 | 0.67 | 0.575655 |
Target: 5'- gGAuUCGCAGUGGCaGGCGcUCGgcgaGCGg -3' miRNA: 3'- gCU-AGCGUCACCG-CCGUaGGCag--CGU- -5' |
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23920 | 5' | -58 | NC_005262.1 | + | 51280 | 0.71 | 0.323864 |
Target: 5'- gCGAUCGCGucGcGCGGCAUCUGaagCGCGg -3' miRNA: 3'- -GCUAGCGUcaC-CGCCGUAGGCa--GCGU- -5' |
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23920 | 5' | -58 | NC_005262.1 | + | 50823 | 0.73 | 0.249991 |
Target: 5'- gGGUCGCGGUcgucgacgccgagccGGuCGGCGaugCCGUCGCGc -3' miRNA: 3'- gCUAGCGUCA---------------CC-GCCGUa--GGCAGCGU- -5' |
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23920 | 5' | -58 | NC_005262.1 | + | 43472 | 0.68 | 0.48318 |
Target: 5'- uCGAgcCGCuucGUGGCGGCGaCCGUcuaCGCGg -3' miRNA: 3'- -GCUa-GCGu--CACCGCCGUaGGCA---GCGU- -5' |
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23920 | 5' | -58 | NC_005262.1 | + | 40240 | 0.66 | 0.628854 |
Target: 5'- cCGcgCGCGGcgGGCGGUuggucaGUCUG-CGCGg -3' miRNA: 3'- -GCuaGCGUCa-CCGCCG------UAGGCaGCGU- -5' |
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23920 | 5' | -58 | NC_005262.1 | + | 39496 | 0.68 | 0.48318 |
Target: 5'- gCGAgaaGCAucagGGCGGCGagCGUCGCGc -3' miRNA: 3'- -GCUag-CGUca--CCGCCGUagGCAGCGU- -5' |
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23920 | 5' | -58 | NC_005262.1 | + | 38542 | 0.72 | 0.273395 |
Target: 5'- aCGGUCGCGGUGacgauCGGCA-CCGcCGCGg -3' miRNA: 3'- -GCUAGCGUCACc----GCCGUaGGCaGCGU- -5' |
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23920 | 5' | -58 | NC_005262.1 | + | 36859 | 0.71 | 0.323864 |
Target: 5'- uGGUCGCGGauaGGCGGCGaaUCCGgcucgggaucgUCGCGc -3' miRNA: 3'- gCUAGCGUCa--CCGCCGU--AGGC-----------AGCGU- -5' |
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23920 | 5' | -58 | NC_005262.1 | + | 36233 | 0.66 | 0.618175 |
Target: 5'- --cUCGCGcUGcGCGGCGUCC-UCGCc -3' miRNA: 3'- gcuAGCGUcAC-CGCCGUAGGcAGCGu -5' |
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23920 | 5' | -58 | NC_005262.1 | + | 34256 | 1.08 | 0.000783 |
Target: 5'- gCGAUCGCAGUGGCGGCAUCCGUCGCAu -3' miRNA: 3'- -GCUAGCGUCACCGCCGUAGGCAGCGU- -5' |
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23920 | 5' | -58 | NC_005262.1 | + | 34133 | 0.72 | 0.273395 |
Target: 5'- gCGGgcugCGCGGgcgcgGGCGGCAUgCCGcUCGCu -3' miRNA: 3'- -GCUa---GCGUCa----CCGCCGUA-GGC-AGCGu -5' |
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23920 | 5' | -58 | NC_005262.1 | + | 33913 | 0.66 | 0.607507 |
Target: 5'- cCGAUCgGUAGcGGCGGUG-CCGagcUCGCGg -3' miRNA: 3'- -GCUAG-CGUCaCCGCCGUaGGC---AGCGU- -5' |
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23920 | 5' | -58 | NC_005262.1 | + | 33686 | 0.68 | 0.473323 |
Target: 5'- aCGAUCGUGGgcuucgcGGCGGCcggcgugUCGUCGCc -3' miRNA: 3'- -GCUAGCGUCa------CCGCCGua-----GGCAGCGu -5' |
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23920 | 5' | -58 | NC_005262.1 | + | 33151 | 0.68 | 0.473323 |
Target: 5'- -cGUCGUAagGGCGGCA-CCGUCGUc -3' miRNA: 3'- gcUAGCGUcaCCGCCGUaGGCAGCGu -5' |
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23920 | 5' | -58 | NC_005262.1 | + | 29475 | 0.67 | 0.53383 |
Target: 5'- uGAUagUGCAG-GGCGGCGaccgugCCGuUCGCGa -3' miRNA: 3'- gCUA--GCGUCaCCGCCGUa-----GGC-AGCGU- -5' |
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23920 | 5' | -58 | NC_005262.1 | + | 27659 | 0.67 | 0.544196 |
Target: 5'- uCGAUCGCGcUGGCGGUgcucgccucgCCGUaucgCGCAg -3' miRNA: 3'- -GCUAGCGUcACCGCCGua--------GGCA----GCGU- -5' |
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23920 | 5' | -58 | NC_005262.1 | + | 26883 | 0.69 | 0.444383 |
Target: 5'- aCGAUCG-AGUGGgcCGGCGcgUCCGUUGUc -3' miRNA: 3'- -GCUAGCgUCACC--GCCGU--AGGCAGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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