miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23921 5' -53.2 NC_005262.1 + 88 0.67 0.785467
Target:  5'- uCGgcCGCGcCGCACGcUUCUGCGCa-- -3'
miRNA:   3'- -GCaaGUGCuGCGUGU-AGGACGCGaua -5'
23921 5' -53.2 NC_005262.1 + 3794 0.66 0.827733
Target:  5'- gGUUCACGccGCGCAuCAUCUcgaggaucgggugcaUGCGCg-- -3'
miRNA:   3'- gCAAGUGC--UGCGU-GUAGG---------------ACGCGaua -5'
23921 5' -53.2 NC_005262.1 + 4528 0.71 0.557319
Target:  5'- ---gCGCGACGCGCucguuucgcUCCUGCGCg-- -3'
miRNA:   3'- gcaaGUGCUGCGUGu--------AGGACGCGaua -5'
23921 5' -53.2 NC_005262.1 + 5141 0.68 0.71104
Target:  5'- ----gGCGGCGCugAUCCUgcucggcGCGCUGa -3'
miRNA:   3'- gcaagUGCUGCGugUAGGA-------CGCGAUa -5'
23921 5' -53.2 NC_005262.1 + 10818 0.69 0.668179
Target:  5'- aCGaUCACGACcagcgcauGCGCGUCCgccGCGCUc- -3'
miRNA:   3'- -GCaAGUGCUG--------CGUGUAGGa--CGCGAua -5'
23921 5' -53.2 NC_005262.1 + 12657 0.73 0.442345
Target:  5'- gCGcgCGCGGCGCGCGgcgaacCCUGCGCc-- -3'
miRNA:   3'- -GCaaGUGCUGCGUGUa-----GGACGCGaua -5'
23921 5' -53.2 NC_005262.1 + 12807 0.66 0.850849
Target:  5'- ----gGCGGCGCGCAgCCgGCGCg-- -3'
miRNA:   3'- gcaagUGCUGCGUGUaGGaCGCGaua -5'
23921 5' -53.2 NC_005262.1 + 13452 0.72 0.48275
Target:  5'- gCGgucgUCGCgGGCGCuuCGUCCUGCGCg-- -3'
miRNA:   3'- -GCa---AGUG-CUGCGu-GUAGGACGCGaua -5'
23921 5' -53.2 NC_005262.1 + 13704 0.66 0.850849
Target:  5'- uGUUCgcGCGGCGCGgGUUCggucgGCGCa-- -3'
miRNA:   3'- gCAAG--UGCUGCGUgUAGGa----CGCGaua -5'
23921 5' -53.2 NC_005262.1 + 15011 0.77 0.25249
Target:  5'- uCGUgagCuCG-CGCACGUCCUGCGCUGc -3'
miRNA:   3'- -GCAa--GuGCuGCGUGUAGGACGCGAUa -5'
23921 5' -53.2 NC_005262.1 + 16354 0.68 0.72294
Target:  5'- uCGUUCGCGACcuuguucuGCugGUUCUGgGCg-- -3'
miRNA:   3'- -GCAAGUGCUG--------CGugUAGGACgCGaua -5'
23921 5' -53.2 NC_005262.1 + 16561 0.66 0.833201
Target:  5'- cCGUUCACGGC-CGCGgaugCCgagcagGCGCg-- -3'
miRNA:   3'- -GCAAGUGCUGcGUGUa---GGa-----CGCGaua -5'
23921 5' -53.2 NC_005262.1 + 18687 0.69 0.653741
Target:  5'- uGUUCGCGGCacccgccgaguugaGCGCggucaacguGUCCUGCGCg-- -3'
miRNA:   3'- gCAAGUGCUG--------------CGUG---------UAGGACGCGaua -5'
23921 5' -53.2 NC_005262.1 + 22627 0.66 0.824046
Target:  5'- gCGaUCGCGGCgGUGCccUCCUGCGCg-- -3'
miRNA:   3'- -GCaAGUGCUG-CGUGu-AGGACGCGaua -5'
23921 5' -53.2 NC_005262.1 + 24865 0.66 0.814686
Target:  5'- aGUgcUCgGCGAUGUGCAUCCgccgGCGCg-- -3'
miRNA:   3'- gCA--AG-UGCUGCGUGUAGGa---CGCGaua -5'
23921 5' -53.2 NC_005262.1 + 32413 1.06 0.002824
Target:  5'- aCGUUCACGACGCACAUCCUGCGCUAUc -3'
miRNA:   3'- -GCAAGUGCUGCGUGUAGGACGCGAUA- -5'
23921 5' -53.2 NC_005262.1 + 34120 0.66 0.842138
Target:  5'- aCGUUCgACGAgCGCGCA-CC-GCGCa-- -3'
miRNA:   3'- -GCAAG-UGCU-GCGUGUaGGaCGCGaua -5'
23921 5' -53.2 NC_005262.1 + 34502 0.69 0.668179
Target:  5'- cCGUUCACGGCGCGgA---UGCGCUu- -3'
miRNA:   3'- -GCAAGUGCUGCGUgUaggACGCGAua -5'
23921 5' -53.2 NC_005262.1 + 38269 0.68 0.72294
Target:  5'- aCGgacgUCGCGACGCGgAUgCUGCuGUUGUu -3'
miRNA:   3'- -GCa---AGUGCUGCGUgUAgGACG-CGAUA- -5'
23921 5' -53.2 NC_005262.1 + 40219 0.66 0.824046
Target:  5'- -uUUCACGGCG-AUcUCCUGCGCc-- -3'
miRNA:   3'- gcAAGUGCUGCgUGuAGGACGCGaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.