miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23923 3' -58.1 NC_005262.1 + 41686 0.66 0.605946
Target:  5'- cCGGC-CACGUGCaGCaggUCGACGUUg -3'
miRNA:   3'- uGUCGcGUGCGCGaCGg--AGCUGCAAg -5'
23923 3' -58.1 NC_005262.1 + 5190 0.66 0.605946
Target:  5'- -gGGCGCGgGCGCgGCCggcgCGACc--- -3'
miRNA:   3'- ugUCGCGUgCGCGaCGGa---GCUGcaag -5'
23923 3' -58.1 NC_005262.1 + 12565 0.66 0.605946
Target:  5'- gGCGGCGCuCGUcgagcugcuGCUGCCgcCGGCGa-- -3'
miRNA:   3'- -UGUCGCGuGCG---------CGACGGa-GCUGCaag -5'
23923 3' -58.1 NC_005262.1 + 51425 0.66 0.603797
Target:  5'- gGCGGCGCGCGCGagggcgauaccGUCaCGACGUcCg -3'
miRNA:   3'- -UGUCGCGUGCGCga---------CGGaGCUGCAaG- -5'
23923 3' -58.1 NC_005262.1 + 27664 0.66 0.595211
Target:  5'- --cGCGCugGCgguGCUcGCCUCGcCGUaUCg -3'
miRNA:   3'- uguCGCGugCG---CGA-CGGAGCuGCA-AG- -5'
23923 3' -58.1 NC_005262.1 + 49687 0.66 0.595211
Target:  5'- gGCGGCGCGCGCaacCUGaaCCgCGACGg-- -3'
miRNA:   3'- -UGUCGCGUGCGc--GAC--GGaGCUGCaag -5'
23923 3' -58.1 NC_005262.1 + 20588 0.66 0.595211
Target:  5'- aGCAGCGCGCgGCGC-GCCgcagGGCuGUUg -3'
miRNA:   3'- -UGUCGCGUG-CGCGaCGGag--CUG-CAAg -5'
23923 3' -58.1 NC_005262.1 + 6252 0.66 0.595211
Target:  5'- --cGCGCACGgucuuUGCcGCCUCGAUGauggUCa -3'
miRNA:   3'- uguCGCGUGC-----GCGaCGGAGCUGCa---AG- -5'
23923 3' -58.1 NC_005262.1 + 15701 0.66 0.595211
Target:  5'- gACGGacgaGCAgCGCuaUGCgCUCGACGUg- -3'
miRNA:   3'- -UGUCg---CGU-GCGcgACG-GAGCUGCAag -5'
23923 3' -58.1 NC_005262.1 + 34501 0.66 0.588785
Target:  5'- gGCGGCGCGCGacuucugcgagacgaCGCgGCUgUGGCGUUUu -3'
miRNA:   3'- -UGUCGCGUGC---------------GCGaCGGaGCUGCAAG- -5'
23923 3' -58.1 NC_005262.1 + 59957 0.66 0.584507
Target:  5'- aGCGGCacguCACGCGCgggGCgCUCGGCa--- -3'
miRNA:   3'- -UGUCGc---GUGCGCGa--CG-GAGCUGcaag -5'
23923 3' -58.1 NC_005262.1 + 60335 0.66 0.584507
Target:  5'- uACGGCGCGCGCGgCUaCCUgaagGACGg-- -3'
miRNA:   3'- -UGUCGCGUGCGC-GAcGGAg---CUGCaag -5'
23923 3' -58.1 NC_005262.1 + 20061 0.66 0.584507
Target:  5'- aGCAcGCGCACGauCGCgGUUUCGACcUUCu -3'
miRNA:   3'- -UGU-CGCGUGC--GCGaCGGAGCUGcAAG- -5'
23923 3' -58.1 NC_005262.1 + 49172 0.66 0.573841
Target:  5'- uGCGuUGCugGCucauGCUGCCUCGAaauCGUUUu -3'
miRNA:   3'- -UGUcGCGugCG----CGACGGAGCU---GCAAG- -5'
23923 3' -58.1 NC_005262.1 + 48195 0.66 0.573841
Target:  5'- cGCuccuGcCGCACGCGCU-CCUCGcGCGcgCg -3'
miRNA:   3'- -UGu---C-GCGUGCGCGAcGGAGC-UGCaaG- -5'
23923 3' -58.1 NC_005262.1 + 35391 0.66 0.563221
Target:  5'- cGCGGCGCucaauaccGCGCGCacgcuccaGCCcggCGACGUguUCg -3'
miRNA:   3'- -UGUCGCG--------UGCGCGa-------CGGa--GCUGCA--AG- -5'
23923 3' -58.1 NC_005262.1 + 53571 0.66 0.563221
Target:  5'- gGC-GCGCACGCGCUGaC-CGGCa--- -3'
miRNA:   3'- -UGuCGCGUGCGCGACgGaGCUGcaag -5'
23923 3' -58.1 NC_005262.1 + 2932 0.66 0.563221
Target:  5'- --cGCGCuuucgcCGCGCauUGCCUCGGCcaUCg -3'
miRNA:   3'- uguCGCGu-----GCGCG--ACGGAGCUGcaAG- -5'
23923 3' -58.1 NC_005262.1 + 26408 0.66 0.563221
Target:  5'- aGCAGaCGCGCGacgcguuccCGCUGCUcugguUCGACGa-- -3'
miRNA:   3'- -UGUC-GCGUGC---------GCGACGG-----AGCUGCaag -5'
23923 3' -58.1 NC_005262.1 + 13040 0.66 0.552654
Target:  5'- cGCGGUGCGCGUcgaGCUGCggccgauuguggCUUGACcgGUUCg -3'
miRNA:   3'- -UGUCGCGUGCG---CGACG------------GAGCUG--CAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.