Results 1 - 20 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23923 | 3' | -58.1 | NC_005262.1 | + | 51425 | 0.66 | 0.603797 |
Target: 5'- gGCGGCGCGCGCGagggcgauaccGUCaCGACGUcCg -3' miRNA: 3'- -UGUCGCGUGCGCga---------CGGaGCUGCAaG- -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 60335 | 0.66 | 0.584507 |
Target: 5'- uACGGCGCGCGCGgCUaCCUgaagGACGg-- -3' miRNA: 3'- -UGUCGCGUGCGC-GAcGGAg---CUGCaag -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 34501 | 0.66 | 0.588785 |
Target: 5'- gGCGGCGCGCGacuucugcgagacgaCGCgGCUgUGGCGUUUu -3' miRNA: 3'- -UGUCGCGUGC---------------GCGaCGGaGCUGCAAG- -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 15701 | 0.66 | 0.595211 |
Target: 5'- gACGGacgaGCAgCGCuaUGCgCUCGACGUg- -3' miRNA: 3'- -UGUCg---CGU-GCGcgACG-GAGCUGCAag -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 6252 | 0.66 | 0.595211 |
Target: 5'- --cGCGCACGgucuuUGCcGCCUCGAUGauggUCa -3' miRNA: 3'- uguCGCGUGC-----GCGaCGGAGCUGCa---AG- -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 20588 | 0.66 | 0.595211 |
Target: 5'- aGCAGCGCGCgGCGC-GCCgcagGGCuGUUg -3' miRNA: 3'- -UGUCGCGUG-CGCGaCGGag--CUG-CAAg -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 49687 | 0.66 | 0.595211 |
Target: 5'- gGCGGCGCGCGCaacCUGaaCCgCGACGg-- -3' miRNA: 3'- -UGUCGCGUGCGc--GAC--GGaGCUGCaag -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 41686 | 0.66 | 0.605946 |
Target: 5'- cCGGC-CACGUGCaGCaggUCGACGUUg -3' miRNA: 3'- uGUCGcGUGCGCGaCGg--AGCUGCAAg -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 27664 | 0.66 | 0.595211 |
Target: 5'- --cGCGCugGCgguGCUcGCCUCGcCGUaUCg -3' miRNA: 3'- uguCGCGugCG---CGA-CGGAGCuGCA-AG- -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 35391 | 0.66 | 0.563221 |
Target: 5'- cGCGGCGCucaauaccGCGCGCacgcuccaGCCcggCGACGUguUCg -3' miRNA: 3'- -UGUCGCG--------UGCGCGa-------CGGa--GCUGCA--AG- -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 26408 | 0.66 | 0.563221 |
Target: 5'- aGCAGaCGCGCGacgcguuccCGCUGCUcugguUCGACGa-- -3' miRNA: 3'- -UGUC-GCGUGC---------GCGACGG-----AGCUGCaag -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 53571 | 0.66 | 0.563221 |
Target: 5'- gGC-GCGCACGCGCUGaC-CGGCa--- -3' miRNA: 3'- -UGuCGCGUGCGCGACgGaGCUGcaag -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 49172 | 0.66 | 0.573841 |
Target: 5'- uGCGuUGCugGCucauGCUGCCUCGAaauCGUUUu -3' miRNA: 3'- -UGUcGCGugCG----CGACGGAGCU---GCAAG- -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 20061 | 0.66 | 0.584507 |
Target: 5'- aGCAcGCGCACGauCGCgGUUUCGACcUUCu -3' miRNA: 3'- -UGU-CGCGUGC--GCGaCGGAGCUGcAAG- -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 12565 | 0.66 | 0.605946 |
Target: 5'- gGCGGCGCuCGUcgagcugcuGCUGCCgcCGGCGa-- -3' miRNA: 3'- -UGUCGCGuGCG---------CGACGGa-GCUGCaag -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 5190 | 0.66 | 0.605946 |
Target: 5'- -gGGCGCGgGCGCgGCCggcgCGACc--- -3' miRNA: 3'- ugUCGCGUgCGCGaCGGa---GCUGcaag -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 13040 | 0.66 | 0.552654 |
Target: 5'- cGCGGUGCGCGUcgaGCUGCggccgauuguggCUUGACcgGUUCg -3' miRNA: 3'- -UGUCGCGUGCG---CGACG------------GAGCUG--CAAG- -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 24731 | 0.66 | 0.552654 |
Target: 5'- --cGCGCugGCGCgcGCgaUCGGCGUg- -3' miRNA: 3'- uguCGCGugCGCGa-CGg-AGCUGCAag -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 32312 | 0.66 | 0.552654 |
Target: 5'- gGCAGCGCGUGCGCUguucauggGCCgucaggcaGGCGUgaUCg -3' miRNA: 3'- -UGUCGCGUGCGCGA--------CGGag------CUGCA--AG- -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 59957 | 0.66 | 0.584507 |
Target: 5'- aGCGGCacguCACGCGCgggGCgCUCGGCa--- -3' miRNA: 3'- -UGUCGc---GUGCGCGa--CG-GAGCUGcaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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