miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23923 3' -58.1 NC_005262.1 + 31491 1.09 0.000548
Target:  5'- aACAGCGCACGCGCUGCCUCGACGUUCg -3'
miRNA:   3'- -UGUCGCGUGCGCGACGGAGCUGCAAG- -5'
23923 3' -58.1 NC_005262.1 + 23458 0.77 0.133185
Target:  5'- -uGGCGCAUGCGCgGCCUgGACGa-- -3'
miRNA:   3'- ugUCGCGUGCGCGaCGGAgCUGCaag -5'
23923 3' -58.1 NC_005262.1 + 11946 0.76 0.15666
Target:  5'- cAUGGCGCACGCGCUGgggaUCGACGg-- -3'
miRNA:   3'- -UGUCGCGUGCGCGACgg--AGCUGCaag -5'
23923 3' -58.1 NC_005262.1 + 29775 0.74 0.193753
Target:  5'- cGCGGCGCACGaUGCgGCC-CGGCGUc- -3'
miRNA:   3'- -UGUCGCGUGC-GCGaCGGaGCUGCAag -5'
23923 3' -58.1 NC_005262.1 + 52393 0.74 0.209541
Target:  5'- cCGGCGCG-GCGCgGCUUCGGCGUg- -3'
miRNA:   3'- uGUCGCGUgCGCGaCGGAGCUGCAag -5'
23923 3' -58.1 NC_005262.1 + 211 0.74 0.215045
Target:  5'- cGCAGCGCGCGCacgaGCaUGCCguaCGGCGUc- -3'
miRNA:   3'- -UGUCGCGUGCG----CG-ACGGa--GCUGCAag -5'
23923 3' -58.1 NC_005262.1 + 61790 0.73 0.220673
Target:  5'- cCAGCGCguuuucgccugcGCgGCGCaUGCCUCGGCGcUCg -3'
miRNA:   3'- uGUCGCG------------UG-CGCG-ACGGAGCUGCaAG- -5'
23923 3' -58.1 NC_005262.1 + 2020 0.73 0.238313
Target:  5'- cACGGCGCugcuuCGUGCUGC-UCGACGg-- -3'
miRNA:   3'- -UGUCGCGu----GCGCGACGgAGCUGCaag -5'
23923 3' -58.1 NC_005262.1 + 53092 0.72 0.250717
Target:  5'- gGCcGCGUGCGCGCgGCCUCGAUc--- -3'
miRNA:   3'- -UGuCGCGUGCGCGaCGGAGCUGcaag -5'
23923 3' -58.1 NC_005262.1 + 35067 0.72 0.250717
Target:  5'- cACGGCGUccggGCGCGCgGCCUCGcgGCGg-- -3'
miRNA:   3'- -UGUCGCG----UGCGCGaCGGAGC--UGCaag -5'
23923 3' -58.1 NC_005262.1 + 43212 0.72 0.263649
Target:  5'- uGCGGCGCgccGCGCGCUGC-UCGcCGggCu -3'
miRNA:   3'- -UGUCGCG---UGCGCGACGgAGCuGCaaG- -5'
23923 3' -58.1 NC_005262.1 + 21688 0.72 0.263649
Target:  5'- gGCGGCGC-CGCGCUGCUguaCG-CGggCa -3'
miRNA:   3'- -UGUCGCGuGCGCGACGGa--GCuGCaaG- -5'
23923 3' -58.1 NC_005262.1 + 28165 0.72 0.284056
Target:  5'- cGCGGCGCaacuGCGCGCggcgGCCgUCGACa--- -3'
miRNA:   3'- -UGUCGCG----UGCGCGa---CGG-AGCUGcaag -5'
23923 3' -58.1 NC_005262.1 + 19446 0.72 0.284056
Target:  5'- -aAGCGCugGgCGUUgGCCUCGAUGcUCa -3'
miRNA:   3'- ugUCGCGugC-GCGA-CGGAGCUGCaAG- -5'
23923 3' -58.1 NC_005262.1 + 10589 0.71 0.29113
Target:  5'- aGCAGCGCgGCGCGagcgGCUUCGAUGa-- -3'
miRNA:   3'- -UGUCGCG-UGCGCga--CGGAGCUGCaag -5'
23923 3' -58.1 NC_005262.1 + 20741 0.71 0.298341
Target:  5'- cGCGGCGCGCgGUGCcgGCCgggUCGAUGUacUCg -3'
miRNA:   3'- -UGUCGCGUG-CGCGa-CGG---AGCUGCA--AG- -5'
23923 3' -58.1 NC_005262.1 + 13691 0.71 0.313177
Target:  5'- cGCGGUGCugGCGCgugaggucgaagUGCCU-GACGUg- -3'
miRNA:   3'- -UGUCGCGugCGCG------------ACGGAgCUGCAag -5'
23923 3' -58.1 NC_005262.1 + 5349 0.7 0.336467
Target:  5'- cGCcGCGCACGC-CUGCCggGGCGUc- -3'
miRNA:   3'- -UGuCGCGUGCGcGACGGagCUGCAag -5'
23923 3' -58.1 NC_005262.1 + 38865 0.7 0.344506
Target:  5'- cGCGGC-CAUGUGCgcaucccgccaUGCCUCGGCGUccUCc -3'
miRNA:   3'- -UGUCGcGUGCGCG-----------ACGGAGCUGCA--AG- -5'
23923 3' -58.1 NC_005262.1 + 14461 0.7 0.344506
Target:  5'- cGCGGCGCGCGC-CUGC-UCGuCGgUCa -3'
miRNA:   3'- -UGUCGCGUGCGcGACGgAGCuGCaAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.