miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23923 3' -58.1 NC_005262.1 + 9320 0.7 0.352682
Target:  5'- uCGGCuGCAC-CGCgagcagcGCCUCGACGUUg -3'
miRNA:   3'- uGUCG-CGUGcGCGa------CGGAGCUGCAAg -5'
23923 3' -58.1 NC_005262.1 + 17220 0.7 0.352682
Target:  5'- gACGGCGCugGCGUcgugGUCgUCGugGgcgUCg -3'
miRNA:   3'- -UGUCGCGugCGCGa---CGG-AGCugCa--AG- -5'
23923 3' -58.1 NC_005262.1 + 18647 0.7 0.360994
Target:  5'- cGCAGCGCGaGCGCcuUGUCgCGcACGUUCu -3'
miRNA:   3'- -UGUCGCGUgCGCG--ACGGaGC-UGCAAG- -5'
23923 3' -58.1 NC_005262.1 + 56700 0.7 0.366893
Target:  5'- gACAGCGUgcgcucgcuggaggACGUGUccgagGCgUCGGCGUUCg -3'
miRNA:   3'- -UGUCGCG--------------UGCGCGa----CGgAGCUGCAAG- -5'
23923 3' -58.1 NC_005262.1 + 10474 0.7 0.378024
Target:  5'- aGCGGCGCGCGCggucGCUcGCCUUGuccauCGUg- -3'
miRNA:   3'- -UGUCGCGUGCG----CGA-CGGAGCu----GCAag -5'
23923 3' -58.1 NC_005262.1 + 2189 0.69 0.384111
Target:  5'- -aGGCGCGCGCGCuucUGCUcggUCGagagcgucuuguccGCGUUCa -3'
miRNA:   3'- ugUCGCGUGCGCG---ACGG---AGC--------------UGCAAG- -5'
23923 3' -58.1 NC_005262.1 + 3294 0.69 0.38674
Target:  5'- gGCGGCcuGCGcCGCGCgGCC-CGGCGUcUCg -3'
miRNA:   3'- -UGUCG--CGU-GCGCGaCGGaGCUGCA-AG- -5'
23923 3' -58.1 NC_005262.1 + 5076 0.69 0.38674
Target:  5'- gGCGGCgGCGCGUGCgaccGgCUCGGCGg-- -3'
miRNA:   3'- -UGUCG-CGUGCGCGa---CgGAGCUGCaag -5'
23923 3' -58.1 NC_005262.1 + 41217 0.69 0.390263
Target:  5'- aGCAGCGC-CGCGCaugcggccgcuaagGCCggauggaGGCGUUCu -3'
miRNA:   3'- -UGUCGCGuGCGCGa-------------CGGag-----CUGCAAG- -5'
23923 3' -58.1 NC_005262.1 + 17102 0.69 0.394696
Target:  5'- cACuGCGCGCGCGgcgcugaCUGCaUCGGCGggCg -3'
miRNA:   3'- -UGuCGCGUGCGC-------GACGgAGCUGCaaG- -5'
23923 3' -58.1 NC_005262.1 + 48095 0.69 0.395586
Target:  5'- -gAGCGCAUaGCGCUGCUcguccgucUCGGCGa-- -3'
miRNA:   3'- ugUCGCGUG-CGCGACGG--------AGCUGCaag -5'
23923 3' -58.1 NC_005262.1 + 18274 0.69 0.395586
Target:  5'- uGCAGUGCaAUGCGCUcgugGCgCUCGAUGaUCu -3'
miRNA:   3'- -UGUCGCG-UGCGCGA----CG-GAGCUGCaAG- -5'
23923 3' -58.1 NC_005262.1 + 61955 0.69 0.404563
Target:  5'- aGCAGgcaacCGCAUGCGCaGCCUgCGGCGagCa -3'
miRNA:   3'- -UGUC-----GCGUGCGCGaCGGA-GCUGCaaG- -5'
23923 3' -58.1 NC_005262.1 + 32792 0.69 0.404563
Target:  5'- cCGGCG-GCGCGCcgGCCaUCG-CGUUCg -3'
miRNA:   3'- uGUCGCgUGCGCGa-CGG-AGCuGCAAG- -5'
23923 3' -58.1 NC_005262.1 + 15498 0.69 0.404563
Target:  5'- gUAGCGCAgGC-CgGCCUCGAgGUUg -3'
miRNA:   3'- uGUCGCGUgCGcGaCGGAGCUgCAAg -5'
23923 3' -58.1 NC_005262.1 + 10796 0.69 0.413666
Target:  5'- uACuGCuGCGCGaGCUGCCgCGACGaUCa -3'
miRNA:   3'- -UGuCG-CGUGCgCGACGGaGCUGCaAG- -5'
23923 3' -58.1 NC_005262.1 + 41545 0.69 0.413666
Target:  5'- gACGGCGUgAUGCGCagGCCggcCGGCGUg- -3'
miRNA:   3'- -UGUCGCG-UGCGCGa-CGGa--GCUGCAag -5'
23923 3' -58.1 NC_005262.1 + 41575 0.69 0.420113
Target:  5'- gGCGGCGCgGCcgugagcuugucgaGCGCgaGCC-CGGCGUUCu -3'
miRNA:   3'- -UGUCGCG-UG--------------CGCGa-CGGaGCUGCAAG- -5'
23923 3' -58.1 NC_005262.1 + 33394 0.69 0.421967
Target:  5'- cCAGCGCACGCggcucguGCUGUaCUCGGgGUg- -3'
miRNA:   3'- uGUCGCGUGCG-------CGACG-GAGCUgCAag -5'
23923 3' -58.1 NC_005262.1 + 485 0.69 0.422895
Target:  5'- cGCGGCGCGCGUGUU-CCacgUCGACGc-- -3'
miRNA:   3'- -UGUCGCGUGCGCGAcGG---AGCUGCaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.