Results 41 - 60 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23923 | 3' | -58.1 | NC_005262.1 | + | 4561 | 0.69 | 0.426621 |
Target: 5'- cGCGGCGCAUcucgcgccagcggcgGCGCUGCUcgGGCGUg- -3' miRNA: 3'- -UGUCGCGUG---------------CGCGACGGagCUGCAag -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 47897 | 0.69 | 0.432246 |
Target: 5'- cGCGGCGCACGuCGCgcGCacgCGGCGg-- -3' miRNA: 3'- -UGUCGCGUGC-GCGa-CGga-GCUGCaag -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 13822 | 0.69 | 0.432246 |
Target: 5'- -gAGCGgGCGcCGCUGUCUCGucgGCGaUCg -3' miRNA: 3'- ugUCGCgUGC-GCGACGGAGC---UGCaAG- -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 9601 | 0.68 | 0.438864 |
Target: 5'- cGCGGgcgcuggaGCACGCGCUcggacaggaccggcGCCUUGACGaUCu -3' miRNA: 3'- -UGUCg-------CGUGCGCGA--------------CGGAGCUGCaAG- -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 30888 | 0.68 | 0.441717 |
Target: 5'- aGCGuCGCGCGUGCgacGCCgccggcuuggcCGACGUUCg -3' miRNA: 3'- -UGUcGCGUGCGCGa--CGGa----------GCUGCAAG- -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 4867 | 0.68 | 0.441717 |
Target: 5'- cGCGGCGCAgcuugccgaGCGCcgacucgaccUGCUUCGGCGUg- -3' miRNA: 3'- -UGUCGCGUg--------CGCG----------ACGGAGCUGCAag -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 12401 | 0.68 | 0.451304 |
Target: 5'- cGCGGUGCACacggucagGCGCgGCCUUGGcCGgcgUCg -3' miRNA: 3'- -UGUCGCGUG--------CGCGaCGGAGCU-GCa--AG- -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 28571 | 0.68 | 0.451304 |
Target: 5'- cGCcGCGCGCGCGacggcaUGCCcuaCGGCGUg- -3' miRNA: 3'- -UGuCGCGUGCGCg-----ACGGa--GCUGCAag -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 39594 | 0.68 | 0.451304 |
Target: 5'- cGCAGCGuCGCG-GCUgccGCCUCgGGCGUg- -3' miRNA: 3'- -UGUCGC-GUGCgCGA---CGGAG-CUGCAag -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 9397 | 0.68 | 0.451304 |
Target: 5'- aGCuuGCGCACGaCGUUGCC-CGACa--- -3' miRNA: 3'- -UGu-CGCGUGC-GCGACGGaGCUGcaag -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 52559 | 0.68 | 0.451304 |
Target: 5'- cGCAGCGCGauCGuCGCUGUcgagCUCGGCGc-- -3' miRNA: 3'- -UGUCGCGU--GC-GCGACG----GAGCUGCaag -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 53371 | 0.68 | 0.461004 |
Target: 5'- uCGGCGcCAUGCGcCUGCCgcagacCG-CGUUCa -3' miRNA: 3'- uGUCGC-GUGCGC-GACGGa-----GCuGCAAG- -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 6573 | 0.68 | 0.461004 |
Target: 5'- gGCGGCGCGCGuCGCgaUGCCgcCGACc--- -3' miRNA: 3'- -UGUCGCGUGC-GCG--ACGGa-GCUGcaag -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 30513 | 0.68 | 0.470814 |
Target: 5'- cCGGCGUGCGCGCgaugcgguacGCCUCG-CGg-- -3' miRNA: 3'- uGUCGCGUGCGCGa---------CGGAGCuGCaag -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 20214 | 0.68 | 0.470814 |
Target: 5'- --uGCGUuCGCGCUGaCCUCGACc--- -3' miRNA: 3'- uguCGCGuGCGCGAC-GGAGCUGcaag -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 29217 | 0.68 | 0.480728 |
Target: 5'- cACGGCGCcgcACgGCGC-GCacaCGACGUUCg -3' miRNA: 3'- -UGUCGCG---UG-CGCGaCGga-GCUGCAAG- -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 11950 | 0.68 | 0.480728 |
Target: 5'- cGCGGCGC-CGCGCUucaGCacuucgCGACGUc- -3' miRNA: 3'- -UGUCGCGuGCGCGA---CGga----GCUGCAag -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 33514 | 0.68 | 0.480728 |
Target: 5'- gACAGCGCGCuCGaUUGCCcgcUCGGCcuuGUUCa -3' miRNA: 3'- -UGUCGCGUGcGC-GACGG---AGCUG---CAAG- -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 49343 | 0.67 | 0.489737 |
Target: 5'- aGCAgGCGCGCGCcgcgcucGCUGacgaCUCGGCGa-- -3' miRNA: 3'- -UGU-CGCGUGCG-------CGACg---GAGCUGCaag -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 4911 | 0.67 | 0.489737 |
Target: 5'- cGCAGCGCggcagcagccaacGCGCGgaGCUgcgcCGGCGUg- -3' miRNA: 3'- -UGUCGCG-------------UGCGCgaCGGa---GCUGCAag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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