miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23923 3' -58.1 NC_005262.1 + 24731 0.66 0.552654
Target:  5'- --cGCGCugGCGCgcGCgaUCGGCGUg- -3'
miRNA:   3'- uguCGCGugCGCGa-CGg-AGCUGCAag -5'
23923 3' -58.1 NC_005262.1 + 13040 0.66 0.552654
Target:  5'- cGCGGUGCGCGUcgaGCUGCggccgauuguggCUUGACcgGUUCg -3'
miRNA:   3'- -UGUCGCGUGCG---CGACG------------GAGCUG--CAAG- -5'
23923 3' -58.1 NC_005262.1 + 52241 0.67 0.546342
Target:  5'- aGCAGCGCGCGUgaugcacuucagccgGCgagcgGCCgagUCGcAUGUUCa -3'
miRNA:   3'- -UGUCGCGUGCG---------------CGa----CGG---AGC-UGCAAG- -5'
23923 3' -58.1 NC_005262.1 + 16097 0.67 0.542147
Target:  5'- aACGGCGCGgGC-CUGaaggacuuCCUCGGCGcgCg -3'
miRNA:   3'- -UGUCGCGUgCGcGAC--------GGAGCUGCaaG- -5'
23923 3' -58.1 NC_005262.1 + 34882 0.67 0.542147
Target:  5'- -gGGCGCGCucGCgagcauccucauGCUGCCgaagcaGACGUUCa -3'
miRNA:   3'- ugUCGCGUG--CG------------CGACGGag----CUGCAAG- -5'
23923 3' -58.1 NC_005262.1 + 17986 0.67 0.542147
Target:  5'- aAguGCGCACGUucuucgacgugGCUGCCgggccCGACGa-- -3'
miRNA:   3'- -UguCGCGUGCG-----------CGACGGa----GCUGCaag -5'
23923 3' -58.1 NC_005262.1 + 51964 0.67 0.542147
Target:  5'- --cGCGCGCGC-CUGCgCUCGAaacuguccgGUUCg -3'
miRNA:   3'- uguCGCGUGCGcGACG-GAGCUg--------CAAG- -5'
23923 3' -58.1 NC_005262.1 + 15182 0.67 0.531707
Target:  5'- cGCAGCGCuACGCGgcguuCUGCaaggCGACGa-- -3'
miRNA:   3'- -UGUCGCG-UGCGC-----GACGga--GCUGCaag -5'
23923 3' -58.1 NC_005262.1 + 3550 0.67 0.531707
Target:  5'- cCGGCGUAU-CGCgGCCUUGACGcgCu -3'
miRNA:   3'- uGUCGCGUGcGCGaCGGAGCUGCaaG- -5'
23923 3' -58.1 NC_005262.1 + 44778 0.67 0.521341
Target:  5'- cCAGCGCGCG-GCagGCCgagcUCGACGa-- -3'
miRNA:   3'- uGUCGCGUGCgCGa-CGG----AGCUGCaag -5'
23923 3' -58.1 NC_005262.1 + 13531 0.67 0.511054
Target:  5'- cCGGCGCGgGCGC-GCCcucguugCGGCGgUCg -3'
miRNA:   3'- uGUCGCGUgCGCGaCGGa------GCUGCaAG- -5'
23923 3' -58.1 NC_005262.1 + 43748 0.67 0.511054
Target:  5'- --cGUGCGCGUGCUGaCCaCGAaGUUCg -3'
miRNA:   3'- uguCGCGUGCGCGAC-GGaGCUgCAAG- -5'
23923 3' -58.1 NC_005262.1 + 35336 0.67 0.511054
Target:  5'- cGCAGUGCAUGCGCaucaUCGGCGa-- -3'
miRNA:   3'- -UGUCGCGUGCGCGacggAGCUGCaag -5'
23923 3' -58.1 NC_005262.1 + 35464 0.67 0.500853
Target:  5'- uGCAcGCGCACGgGCauccggaaccaUGCCUCGAUc--- -3'
miRNA:   3'- -UGU-CGCGUGCgCG-----------ACGGAGCUGcaag -5'
23923 3' -58.1 NC_005262.1 + 49223 0.67 0.500853
Target:  5'- uGCGGUGCGCGUGagcGCCgCGGCGa-- -3'
miRNA:   3'- -UGUCGCGUGCGCga-CGGaGCUGCaag -5'
23923 3' -58.1 NC_005262.1 + 36224 0.67 0.500853
Target:  5'- gGCAG-GCuucuCGCGCUGCg-CGGCGUccUCg -3'
miRNA:   3'- -UGUCgCGu---GCGCGACGgaGCUGCA--AG- -5'
23923 3' -58.1 NC_005262.1 + 46318 0.67 0.500853
Target:  5'- cGCGGCGCGCGCuucgucCUGgaaCUCGGCGa-- -3'
miRNA:   3'- -UGUCGCGUGCGc-----GACg--GAGCUGCaag -5'
23923 3' -58.1 NC_005262.1 + 44922 0.67 0.500853
Target:  5'- uGCGGCGCAagGCGCUGCUcCgGAUGcgCu -3'
miRNA:   3'- -UGUCGCGUg-CGCGACGGaG-CUGCaaG- -5'
23923 3' -58.1 NC_005262.1 + 374 0.67 0.500853
Target:  5'- --cGCGCAUG-GUUGCCUCGGCu--- -3'
miRNA:   3'- uguCGCGUGCgCGACGGAGCUGcaag -5'
23923 3' -58.1 NC_005262.1 + 447 0.67 0.49781
Target:  5'- -gAGCGCAUgauccgccuugaggGCGUUGaCCUCGGCGa-- -3'
miRNA:   3'- ugUCGCGUG--------------CGCGAC-GGAGCUGCaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.