miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23923 3' -58.1 NC_005262.1 + 52970 0.67 0.490742
Target:  5'- cGCGGCGgACGCGCaUGCgCUgGuCGUgaUCg -3'
miRNA:   3'- -UGUCGCgUGCGCG-ACG-GAgCuGCA--AG- -5'
23923 3' -58.1 NC_005262.1 + 19893 0.67 0.490742
Target:  5'- -uGGCGC-CGCGCUGaCCgccuUCGAC-UUCa -3'
miRNA:   3'- ugUCGCGuGCGCGAC-GG----AGCUGcAAG- -5'
23923 3' -58.1 NC_005262.1 + 7252 0.67 0.490742
Target:  5'- --uGCGCcccuCGCGCUGC-UCGACGg-- -3'
miRNA:   3'- uguCGCGu---GCGCGACGgAGCUGCaag -5'
23923 3' -58.1 NC_005262.1 + 39405 0.67 0.490742
Target:  5'- cGCGGaCGUGCGCGCcGCCgguUUGGCGUc- -3'
miRNA:   3'- -UGUC-GCGUGCGCGaCGG---AGCUGCAag -5'
23923 3' -58.1 NC_005262.1 + 49343 0.67 0.489737
Target:  5'- aGCAgGCGCGCGCcgcgcucGCUGacgaCUCGGCGa-- -3'
miRNA:   3'- -UGU-CGCGUGCG-------CGACg---GAGCUGCaag -5'
23923 3' -58.1 NC_005262.1 + 4911 0.67 0.489737
Target:  5'- cGCAGCGCggcagcagccaacGCGCGgaGCUgcgcCGGCGUg- -3'
miRNA:   3'- -UGUCGCG-------------UGCGCgaCGGa---GCUGCAag -5'
23923 3' -58.1 NC_005262.1 + 11950 0.68 0.480728
Target:  5'- cGCGGCGC-CGCGCUucaGCacuucgCGACGUc- -3'
miRNA:   3'- -UGUCGCGuGCGCGA---CGga----GCUGCAag -5'
23923 3' -58.1 NC_005262.1 + 29217 0.68 0.480728
Target:  5'- cACGGCGCcgcACgGCGC-GCacaCGACGUUCg -3'
miRNA:   3'- -UGUCGCG---UG-CGCGaCGga-GCUGCAAG- -5'
23923 3' -58.1 NC_005262.1 + 33514 0.68 0.480728
Target:  5'- gACAGCGCGCuCGaUUGCCcgcUCGGCcuuGUUCa -3'
miRNA:   3'- -UGUCGCGUGcGC-GACGG---AGCUG---CAAG- -5'
23923 3' -58.1 NC_005262.1 + 30513 0.68 0.470814
Target:  5'- cCGGCGUGCGCGCgaugcgguacGCCUCG-CGg-- -3'
miRNA:   3'- uGUCGCGUGCGCGa---------CGGAGCuGCaag -5'
23923 3' -58.1 NC_005262.1 + 20214 0.68 0.470814
Target:  5'- --uGCGUuCGCGCUGaCCUCGACc--- -3'
miRNA:   3'- uguCGCGuGCGCGAC-GGAGCUGcaag -5'
23923 3' -58.1 NC_005262.1 + 53371 0.68 0.461004
Target:  5'- uCGGCGcCAUGCGcCUGCCgcagacCG-CGUUCa -3'
miRNA:   3'- uGUCGC-GUGCGC-GACGGa-----GCuGCAAG- -5'
23923 3' -58.1 NC_005262.1 + 6573 0.68 0.461004
Target:  5'- gGCGGCGCGCGuCGCgaUGCCgcCGACc--- -3'
miRNA:   3'- -UGUCGCGUGC-GCG--ACGGa-GCUGcaag -5'
23923 3' -58.1 NC_005262.1 + 39594 0.68 0.451304
Target:  5'- cGCAGCGuCGCG-GCUgccGCCUCgGGCGUg- -3'
miRNA:   3'- -UGUCGC-GUGCgCGA---CGGAG-CUGCAag -5'
23923 3' -58.1 NC_005262.1 + 52559 0.68 0.451304
Target:  5'- cGCAGCGCGauCGuCGCUGUcgagCUCGGCGc-- -3'
miRNA:   3'- -UGUCGCGU--GC-GCGACG----GAGCUGCaag -5'
23923 3' -58.1 NC_005262.1 + 28571 0.68 0.451304
Target:  5'- cGCcGCGCGCGCGacggcaUGCCcuaCGGCGUg- -3'
miRNA:   3'- -UGuCGCGUGCGCg-----ACGGa--GCUGCAag -5'
23923 3' -58.1 NC_005262.1 + 12401 0.68 0.451304
Target:  5'- cGCGGUGCACacggucagGCGCgGCCUUGGcCGgcgUCg -3'
miRNA:   3'- -UGUCGCGUG--------CGCGaCGGAGCU-GCa--AG- -5'
23923 3' -58.1 NC_005262.1 + 9397 0.68 0.451304
Target:  5'- aGCuuGCGCACGaCGUUGCC-CGACa--- -3'
miRNA:   3'- -UGu-CGCGUGC-GCGACGGaGCUGcaag -5'
23923 3' -58.1 NC_005262.1 + 4867 0.68 0.441717
Target:  5'- cGCGGCGCAgcuugccgaGCGCcgacucgaccUGCUUCGGCGUg- -3'
miRNA:   3'- -UGUCGCGUg--------CGCG----------ACGGAGCUGCAag -5'
23923 3' -58.1 NC_005262.1 + 30888 0.68 0.441717
Target:  5'- aGCGuCGCGCGUGCgacGCCgccggcuuggcCGACGUUCg -3'
miRNA:   3'- -UGUcGCGUGCGCGa--CGGa----------GCUGCAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.