Results 61 - 80 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23923 | 3' | -58.1 | NC_005262.1 | + | 9601 | 0.68 | 0.438864 |
Target: 5'- cGCGGgcgcuggaGCACGCGCUcggacaggaccggcGCCUUGACGaUCu -3' miRNA: 3'- -UGUCg-------CGUGCGCGA--------------CGGAGCUGCaAG- -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 13822 | 0.69 | 0.432246 |
Target: 5'- -gAGCGgGCGcCGCUGUCUCGucgGCGaUCg -3' miRNA: 3'- ugUCGCgUGC-GCGACGGAGC---UGCaAG- -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 47897 | 0.69 | 0.432246 |
Target: 5'- cGCGGCGCACGuCGCgcGCacgCGGCGg-- -3' miRNA: 3'- -UGUCGCGUGC-GCGa-CGga-GCUGCaag -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 4561 | 0.69 | 0.426621 |
Target: 5'- cGCGGCGCAUcucgcgccagcggcgGCGCUGCUcgGGCGUg- -3' miRNA: 3'- -UGUCGCGUG---------------CGCGACGGagCUGCAag -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 485 | 0.69 | 0.422895 |
Target: 5'- cGCGGCGCGCGUGUU-CCacgUCGACGc-- -3' miRNA: 3'- -UGUCGCGUGCGCGAcGG---AGCUGCaag -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 33394 | 0.69 | 0.421967 |
Target: 5'- cCAGCGCACGCggcucguGCUGUaCUCGGgGUg- -3' miRNA: 3'- uGUCGCGUGCG-------CGACG-GAGCUgCAag -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 41575 | 0.69 | 0.420113 |
Target: 5'- gGCGGCGCgGCcgugagcuugucgaGCGCgaGCC-CGGCGUUCu -3' miRNA: 3'- -UGUCGCG-UG--------------CGCGa-CGGaGCUGCAAG- -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 41545 | 0.69 | 0.413666 |
Target: 5'- gACGGCGUgAUGCGCagGCCggcCGGCGUg- -3' miRNA: 3'- -UGUCGCG-UGCGCGa-CGGa--GCUGCAag -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 10796 | 0.69 | 0.413666 |
Target: 5'- uACuGCuGCGCGaGCUGCCgCGACGaUCa -3' miRNA: 3'- -UGuCG-CGUGCgCGACGGaGCUGCaAG- -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 15498 | 0.69 | 0.404563 |
Target: 5'- gUAGCGCAgGC-CgGCCUCGAgGUUg -3' miRNA: 3'- uGUCGCGUgCGcGaCGGAGCUgCAAg -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 61955 | 0.69 | 0.404563 |
Target: 5'- aGCAGgcaacCGCAUGCGCaGCCUgCGGCGagCa -3' miRNA: 3'- -UGUC-----GCGUGCGCGaCGGA-GCUGCaaG- -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 32792 | 0.69 | 0.404563 |
Target: 5'- cCGGCG-GCGCGCcgGCCaUCG-CGUUCg -3' miRNA: 3'- uGUCGCgUGCGCGa-CGG-AGCuGCAAG- -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 18274 | 0.69 | 0.395586 |
Target: 5'- uGCAGUGCaAUGCGCUcgugGCgCUCGAUGaUCu -3' miRNA: 3'- -UGUCGCG-UGCGCGA----CG-GAGCUGCaAG- -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 48095 | 0.69 | 0.395586 |
Target: 5'- -gAGCGCAUaGCGCUGCUcguccgucUCGGCGa-- -3' miRNA: 3'- ugUCGCGUG-CGCGACGG--------AGCUGCaag -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 17102 | 0.69 | 0.394696 |
Target: 5'- cACuGCGCGCGCGgcgcugaCUGCaUCGGCGggCg -3' miRNA: 3'- -UGuCGCGUGCGC-------GACGgAGCUGCaaG- -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 41217 | 0.69 | 0.390263 |
Target: 5'- aGCAGCGC-CGCGCaugcggccgcuaagGCCggauggaGGCGUUCu -3' miRNA: 3'- -UGUCGCGuGCGCGa-------------CGGag-----CUGCAAG- -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 5076 | 0.69 | 0.38674 |
Target: 5'- gGCGGCgGCGCGUGCgaccGgCUCGGCGg-- -3' miRNA: 3'- -UGUCG-CGUGCGCGa---CgGAGCUGCaag -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 3294 | 0.69 | 0.38674 |
Target: 5'- gGCGGCcuGCGcCGCGCgGCC-CGGCGUcUCg -3' miRNA: 3'- -UGUCG--CGU-GCGCGaCGGaGCUGCA-AG- -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 2189 | 0.69 | 0.384111 |
Target: 5'- -aGGCGCGCGCGCuucUGCUcggUCGagagcgucuuguccGCGUUCa -3' miRNA: 3'- ugUCGCGUGCGCG---ACGG---AGC--------------UGCAAG- -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 10474 | 0.7 | 0.378024 |
Target: 5'- aGCGGCGCGCGCggucGCUcGCCUUGuccauCGUg- -3' miRNA: 3'- -UGUCGCGUGCG----CGA-CGGAGCu----GCAag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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