miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23923 3' -58.1 NC_005262.1 + 211 0.74 0.215045
Target:  5'- cGCAGCGCGCGCacgaGCaUGCCguaCGGCGUc- -3'
miRNA:   3'- -UGUCGCGUGCG----CG-ACGGa--GCUGCAag -5'
23923 3' -58.1 NC_005262.1 + 374 0.67 0.500853
Target:  5'- --cGCGCAUG-GUUGCCUCGGCu--- -3'
miRNA:   3'- uguCGCGUGCgCGACGGAGCUGcaag -5'
23923 3' -58.1 NC_005262.1 + 447 0.67 0.49781
Target:  5'- -gAGCGCAUgauccgccuugaggGCGUUGaCCUCGGCGa-- -3'
miRNA:   3'- ugUCGCGUG--------------CGCGAC-GGAGCUGCaag -5'
23923 3' -58.1 NC_005262.1 + 485 0.69 0.422895
Target:  5'- cGCGGCGCGCGUGUU-CCacgUCGACGc-- -3'
miRNA:   3'- -UGUCGCGUGCGCGAcGG---AGCUGCaag -5'
23923 3' -58.1 NC_005262.1 + 2020 0.73 0.238313
Target:  5'- cACGGCGCugcuuCGUGCUGC-UCGACGg-- -3'
miRNA:   3'- -UGUCGCGu----GCGCGACGgAGCUGCaag -5'
23923 3' -58.1 NC_005262.1 + 2189 0.69 0.384111
Target:  5'- -aGGCGCGCGCGCuucUGCUcggUCGagagcgucuuguccGCGUUCa -3'
miRNA:   3'- ugUCGCGUGCGCG---ACGG---AGC--------------UGCAAG- -5'
23923 3' -58.1 NC_005262.1 + 2932 0.66 0.563221
Target:  5'- --cGCGCuuucgcCGCGCauUGCCUCGGCcaUCg -3'
miRNA:   3'- uguCGCGu-----GCGCG--ACGGAGCUGcaAG- -5'
23923 3' -58.1 NC_005262.1 + 3294 0.69 0.38674
Target:  5'- gGCGGCcuGCGcCGCGCgGCC-CGGCGUcUCg -3'
miRNA:   3'- -UGUCG--CGU-GCGCGaCGGaGCUGCA-AG- -5'
23923 3' -58.1 NC_005262.1 + 3550 0.67 0.531707
Target:  5'- cCGGCGUAU-CGCgGCCUUGACGcgCu -3'
miRNA:   3'- uGUCGCGUGcGCGaCGGAGCUGCaaG- -5'
23923 3' -58.1 NC_005262.1 + 4561 0.69 0.426621
Target:  5'- cGCGGCGCAUcucgcgccagcggcgGCGCUGCUcgGGCGUg- -3'
miRNA:   3'- -UGUCGCGUG---------------CGCGACGGagCUGCAag -5'
23923 3' -58.1 NC_005262.1 + 4867 0.68 0.441717
Target:  5'- cGCGGCGCAgcuugccgaGCGCcgacucgaccUGCUUCGGCGUg- -3'
miRNA:   3'- -UGUCGCGUg--------CGCG----------ACGGAGCUGCAag -5'
23923 3' -58.1 NC_005262.1 + 4911 0.67 0.489737
Target:  5'- cGCAGCGCggcagcagccaacGCGCGgaGCUgcgcCGGCGUg- -3'
miRNA:   3'- -UGUCGCG-------------UGCGCgaCGGa---GCUGCAag -5'
23923 3' -58.1 NC_005262.1 + 5076 0.69 0.38674
Target:  5'- gGCGGCgGCGCGUGCgaccGgCUCGGCGg-- -3'
miRNA:   3'- -UGUCG-CGUGCGCGa---CgGAGCUGCaag -5'
23923 3' -58.1 NC_005262.1 + 5190 0.66 0.605946
Target:  5'- -gGGCGCGgGCGCgGCCggcgCGACc--- -3'
miRNA:   3'- ugUCGCGUgCGCGaCGGa---GCUGcaag -5'
23923 3' -58.1 NC_005262.1 + 5349 0.7 0.336467
Target:  5'- cGCcGCGCACGC-CUGCCggGGCGUc- -3'
miRNA:   3'- -UGuCGCGUGCGcGACGGagCUGCAag -5'
23923 3' -58.1 NC_005262.1 + 6252 0.66 0.595211
Target:  5'- --cGCGCACGgucuuUGCcGCCUCGAUGauggUCa -3'
miRNA:   3'- uguCGCGUGC-----GCGaCGGAGCUGCa---AG- -5'
23923 3' -58.1 NC_005262.1 + 6573 0.68 0.461004
Target:  5'- gGCGGCGCGCGuCGCgaUGCCgcCGACc--- -3'
miRNA:   3'- -UGUCGCGUGC-GCG--ACGGa-GCUGcaag -5'
23923 3' -58.1 NC_005262.1 + 7252 0.67 0.490742
Target:  5'- --uGCGCcccuCGCGCUGC-UCGACGg-- -3'
miRNA:   3'- uguCGCGu---GCGCGACGgAGCUGCaag -5'
23923 3' -58.1 NC_005262.1 + 9320 0.7 0.352682
Target:  5'- uCGGCuGCAC-CGCgagcagcGCCUCGACGUUg -3'
miRNA:   3'- uGUCG-CGUGcGCGa------CGGAGCUGCAAg -5'
23923 3' -58.1 NC_005262.1 + 9397 0.68 0.451304
Target:  5'- aGCuuGCGCACGaCGUUGCC-CGACa--- -3'
miRNA:   3'- -UGu-CGCGUGC-GCGACGGaGCUGcaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.