miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23923 3' -58.1 NC_005262.1 + 9601 0.68 0.438864
Target:  5'- cGCGGgcgcuggaGCACGCGCUcggacaggaccggcGCCUUGACGaUCu -3'
miRNA:   3'- -UGUCg-------CGUGCGCGA--------------CGGAGCUGCaAG- -5'
23923 3' -58.1 NC_005262.1 + 10474 0.7 0.378024
Target:  5'- aGCGGCGCGCGCggucGCUcGCCUUGuccauCGUg- -3'
miRNA:   3'- -UGUCGCGUGCG----CGA-CGGAGCu----GCAag -5'
23923 3' -58.1 NC_005262.1 + 10589 0.71 0.29113
Target:  5'- aGCAGCGCgGCGCGagcgGCUUCGAUGa-- -3'
miRNA:   3'- -UGUCGCG-UGCGCga--CGGAGCUGCaag -5'
23923 3' -58.1 NC_005262.1 + 10796 0.69 0.413666
Target:  5'- uACuGCuGCGCGaGCUGCCgCGACGaUCa -3'
miRNA:   3'- -UGuCG-CGUGCgCGACGGaGCUGCaAG- -5'
23923 3' -58.1 NC_005262.1 + 11946 0.76 0.15666
Target:  5'- cAUGGCGCACGCGCUGgggaUCGACGg-- -3'
miRNA:   3'- -UGUCGCGUGCGCGACgg--AGCUGCaag -5'
23923 3' -58.1 NC_005262.1 + 11950 0.68 0.480728
Target:  5'- cGCGGCGC-CGCGCUucaGCacuucgCGACGUc- -3'
miRNA:   3'- -UGUCGCGuGCGCGA---CGga----GCUGCAag -5'
23923 3' -58.1 NC_005262.1 + 12401 0.68 0.451304
Target:  5'- cGCGGUGCACacggucagGCGCgGCCUUGGcCGgcgUCg -3'
miRNA:   3'- -UGUCGCGUG--------CGCGaCGGAGCU-GCa--AG- -5'
23923 3' -58.1 NC_005262.1 + 12565 0.66 0.605946
Target:  5'- gGCGGCGCuCGUcgagcugcuGCUGCCgcCGGCGa-- -3'
miRNA:   3'- -UGUCGCGuGCG---------CGACGGa-GCUGCaag -5'
23923 3' -58.1 NC_005262.1 + 13040 0.66 0.552654
Target:  5'- cGCGGUGCGCGUcgaGCUGCggccgauuguggCUUGACcgGUUCg -3'
miRNA:   3'- -UGUCGCGUGCG---CGACG------------GAGCUG--CAAG- -5'
23923 3' -58.1 NC_005262.1 + 13531 0.67 0.511054
Target:  5'- cCGGCGCGgGCGC-GCCcucguugCGGCGgUCg -3'
miRNA:   3'- uGUCGCGUgCGCGaCGGa------GCUGCaAG- -5'
23923 3' -58.1 NC_005262.1 + 13691 0.71 0.313177
Target:  5'- cGCGGUGCugGCGCgugaggucgaagUGCCU-GACGUg- -3'
miRNA:   3'- -UGUCGCGugCGCG------------ACGGAgCUGCAag -5'
23923 3' -58.1 NC_005262.1 + 13822 0.69 0.432246
Target:  5'- -gAGCGgGCGcCGCUGUCUCGucgGCGaUCg -3'
miRNA:   3'- ugUCGCgUGC-GCGACGGAGC---UGCaAG- -5'
23923 3' -58.1 NC_005262.1 + 14461 0.7 0.344506
Target:  5'- cGCGGCGCGCGC-CUGC-UCGuCGgUCa -3'
miRNA:   3'- -UGUCGCGUGCGcGACGgAGCuGCaAG- -5'
23923 3' -58.1 NC_005262.1 + 15182 0.67 0.531707
Target:  5'- cGCAGCGCuACGCGgcguuCUGCaaggCGACGa-- -3'
miRNA:   3'- -UGUCGCG-UGCGC-----GACGga--GCUGCaag -5'
23923 3' -58.1 NC_005262.1 + 15498 0.69 0.404563
Target:  5'- gUAGCGCAgGC-CgGCCUCGAgGUUg -3'
miRNA:   3'- uGUCGCGUgCGcGaCGGAGCUgCAAg -5'
23923 3' -58.1 NC_005262.1 + 15701 0.66 0.595211
Target:  5'- gACGGacgaGCAgCGCuaUGCgCUCGACGUg- -3'
miRNA:   3'- -UGUCg---CGU-GCGcgACG-GAGCUGCAag -5'
23923 3' -58.1 NC_005262.1 + 16097 0.67 0.542147
Target:  5'- aACGGCGCGgGC-CUGaaggacuuCCUCGGCGcgCg -3'
miRNA:   3'- -UGUCGCGUgCGcGAC--------GGAGCUGCaaG- -5'
23923 3' -58.1 NC_005262.1 + 17102 0.69 0.394696
Target:  5'- cACuGCGCGCGCGgcgcugaCUGCaUCGGCGggCg -3'
miRNA:   3'- -UGuCGCGUGCGC-------GACGgAGCUGCaaG- -5'
23923 3' -58.1 NC_005262.1 + 17220 0.7 0.352682
Target:  5'- gACGGCGCugGCGUcgugGUCgUCGugGgcgUCg -3'
miRNA:   3'- -UGUCGCGugCGCGa---CGG-AGCugCa--AG- -5'
23923 3' -58.1 NC_005262.1 + 17986 0.67 0.542147
Target:  5'- aAguGCGCACGUucuucgacgugGCUGCCgggccCGACGa-- -3'
miRNA:   3'- -UguCGCGUGCG-----------CGACGGa----GCUGCaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.