miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23923 3' -58.1 NC_005262.1 + 18274 0.69 0.395586
Target:  5'- uGCAGUGCaAUGCGCUcgugGCgCUCGAUGaUCu -3'
miRNA:   3'- -UGUCGCG-UGCGCGA----CG-GAGCUGCaAG- -5'
23923 3' -58.1 NC_005262.1 + 18647 0.7 0.360994
Target:  5'- cGCAGCGCGaGCGCcuUGUCgCGcACGUUCu -3'
miRNA:   3'- -UGUCGCGUgCGCG--ACGGaGC-UGCAAG- -5'
23923 3' -58.1 NC_005262.1 + 19446 0.72 0.284056
Target:  5'- -aAGCGCugGgCGUUgGCCUCGAUGcUCa -3'
miRNA:   3'- ugUCGCGugC-GCGA-CGGAGCUGCaAG- -5'
23923 3' -58.1 NC_005262.1 + 19893 0.67 0.490742
Target:  5'- -uGGCGC-CGCGCUGaCCgccuUCGAC-UUCa -3'
miRNA:   3'- ugUCGCGuGCGCGAC-GG----AGCUGcAAG- -5'
23923 3' -58.1 NC_005262.1 + 20061 0.66 0.584507
Target:  5'- aGCAcGCGCACGauCGCgGUUUCGACcUUCu -3'
miRNA:   3'- -UGU-CGCGUGC--GCGaCGGAGCUGcAAG- -5'
23923 3' -58.1 NC_005262.1 + 20214 0.68 0.470814
Target:  5'- --uGCGUuCGCGCUGaCCUCGACc--- -3'
miRNA:   3'- uguCGCGuGCGCGAC-GGAGCUGcaag -5'
23923 3' -58.1 NC_005262.1 + 20588 0.66 0.595211
Target:  5'- aGCAGCGCGCgGCGC-GCCgcagGGCuGUUg -3'
miRNA:   3'- -UGUCGCGUG-CGCGaCGGag--CUG-CAAg -5'
23923 3' -58.1 NC_005262.1 + 20741 0.71 0.298341
Target:  5'- cGCGGCGCGCgGUGCcgGCCgggUCGAUGUacUCg -3'
miRNA:   3'- -UGUCGCGUG-CGCGa-CGG---AGCUGCA--AG- -5'
23923 3' -58.1 NC_005262.1 + 21688 0.72 0.263649
Target:  5'- gGCGGCGC-CGCGCUGCUguaCG-CGggCa -3'
miRNA:   3'- -UGUCGCGuGCGCGACGGa--GCuGCaaG- -5'
23923 3' -58.1 NC_005262.1 + 23458 0.77 0.133185
Target:  5'- -uGGCGCAUGCGCgGCCUgGACGa-- -3'
miRNA:   3'- ugUCGCGUGCGCGaCGGAgCUGCaag -5'
23923 3' -58.1 NC_005262.1 + 24731 0.66 0.552654
Target:  5'- --cGCGCugGCGCgcGCgaUCGGCGUg- -3'
miRNA:   3'- uguCGCGugCGCGa-CGg-AGCUGCAag -5'
23923 3' -58.1 NC_005262.1 + 26408 0.66 0.563221
Target:  5'- aGCAGaCGCGCGacgcguuccCGCUGCUcugguUCGACGa-- -3'
miRNA:   3'- -UGUC-GCGUGC---------GCGACGG-----AGCUGCaag -5'
23923 3' -58.1 NC_005262.1 + 27664 0.66 0.595211
Target:  5'- --cGCGCugGCgguGCUcGCCUCGcCGUaUCg -3'
miRNA:   3'- uguCGCGugCG---CGA-CGGAGCuGCA-AG- -5'
23923 3' -58.1 NC_005262.1 + 28165 0.72 0.284056
Target:  5'- cGCGGCGCaacuGCGCGCggcgGCCgUCGACa--- -3'
miRNA:   3'- -UGUCGCG----UGCGCGa---CGG-AGCUGcaag -5'
23923 3' -58.1 NC_005262.1 + 28571 0.68 0.451304
Target:  5'- cGCcGCGCGCGCGacggcaUGCCcuaCGGCGUg- -3'
miRNA:   3'- -UGuCGCGUGCGCg-----ACGGa--GCUGCAag -5'
23923 3' -58.1 NC_005262.1 + 29217 0.68 0.480728
Target:  5'- cACGGCGCcgcACgGCGC-GCacaCGACGUUCg -3'
miRNA:   3'- -UGUCGCG---UG-CGCGaCGga-GCUGCAAG- -5'
23923 3' -58.1 NC_005262.1 + 29775 0.74 0.193753
Target:  5'- cGCGGCGCACGaUGCgGCC-CGGCGUc- -3'
miRNA:   3'- -UGUCGCGUGC-GCGaCGGaGCUGCAag -5'
23923 3' -58.1 NC_005262.1 + 30513 0.68 0.470814
Target:  5'- cCGGCGUGCGCGCgaugcgguacGCCUCG-CGg-- -3'
miRNA:   3'- uGUCGCGUGCGCGa---------CGGAGCuGCaag -5'
23923 3' -58.1 NC_005262.1 + 30888 0.68 0.441717
Target:  5'- aGCGuCGCGCGUGCgacGCCgccggcuuggcCGACGUUCg -3'
miRNA:   3'- -UGUcGCGUGCGCGa--CGGa----------GCUGCAAG- -5'
23923 3' -58.1 NC_005262.1 + 31491 1.09 0.000548
Target:  5'- aACAGCGCACGCGCUGCCUCGACGUUCg -3'
miRNA:   3'- -UGUCGCGUGCGCGACGGAGCUGCAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.