miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23923 3' -58.1 NC_005262.1 + 61955 0.69 0.404563
Target:  5'- aGCAGgcaacCGCAUGCGCaGCCUgCGGCGagCa -3'
miRNA:   3'- -UGUC-----GCGUGCGCGaCGGA-GCUGCaaG- -5'
23923 3' -58.1 NC_005262.1 + 61790 0.73 0.220673
Target:  5'- cCAGCGCguuuucgccugcGCgGCGCaUGCCUCGGCGcUCg -3'
miRNA:   3'- uGUCGCG------------UG-CGCG-ACGGAGCUGCaAG- -5'
23923 3' -58.1 NC_005262.1 + 60335 0.66 0.584507
Target:  5'- uACGGCGCGCGCGgCUaCCUgaagGACGg-- -3'
miRNA:   3'- -UGUCGCGUGCGC-GAcGGAg---CUGCaag -5'
23923 3' -58.1 NC_005262.1 + 59957 0.66 0.584507
Target:  5'- aGCGGCacguCACGCGCgggGCgCUCGGCa--- -3'
miRNA:   3'- -UGUCGc---GUGCGCGa--CG-GAGCUGcaag -5'
23923 3' -58.1 NC_005262.1 + 56700 0.7 0.366893
Target:  5'- gACAGCGUgcgcucgcuggaggACGUGUccgagGCgUCGGCGUUCg -3'
miRNA:   3'- -UGUCGCG--------------UGCGCGa----CGgAGCUGCAAG- -5'
23923 3' -58.1 NC_005262.1 + 53571 0.66 0.563221
Target:  5'- gGC-GCGCACGCGCUGaC-CGGCa--- -3'
miRNA:   3'- -UGuCGCGUGCGCGACgGaGCUGcaag -5'
23923 3' -58.1 NC_005262.1 + 53371 0.68 0.461004
Target:  5'- uCGGCGcCAUGCGcCUGCCgcagacCG-CGUUCa -3'
miRNA:   3'- uGUCGC-GUGCGC-GACGGa-----GCuGCAAG- -5'
23923 3' -58.1 NC_005262.1 + 53092 0.72 0.250717
Target:  5'- gGCcGCGUGCGCGCgGCCUCGAUc--- -3'
miRNA:   3'- -UGuCGCGUGCGCGaCGGAGCUGcaag -5'
23923 3' -58.1 NC_005262.1 + 52970 0.67 0.490742
Target:  5'- cGCGGCGgACGCGCaUGCgCUgGuCGUgaUCg -3'
miRNA:   3'- -UGUCGCgUGCGCG-ACG-GAgCuGCA--AG- -5'
23923 3' -58.1 NC_005262.1 + 52559 0.68 0.451304
Target:  5'- cGCAGCGCGauCGuCGCUGUcgagCUCGGCGc-- -3'
miRNA:   3'- -UGUCGCGU--GC-GCGACG----GAGCUGCaag -5'
23923 3' -58.1 NC_005262.1 + 52393 0.74 0.209541
Target:  5'- cCGGCGCG-GCGCgGCUUCGGCGUg- -3'
miRNA:   3'- uGUCGCGUgCGCGaCGGAGCUGCAag -5'
23923 3' -58.1 NC_005262.1 + 52241 0.67 0.546342
Target:  5'- aGCAGCGCGCGUgaugcacuucagccgGCgagcgGCCgagUCGcAUGUUCa -3'
miRNA:   3'- -UGUCGCGUGCG---------------CGa----CGG---AGC-UGCAAG- -5'
23923 3' -58.1 NC_005262.1 + 51964 0.67 0.542147
Target:  5'- --cGCGCGCGC-CUGCgCUCGAaacuguccgGUUCg -3'
miRNA:   3'- uguCGCGUGCGcGACG-GAGCUg--------CAAG- -5'
23923 3' -58.1 NC_005262.1 + 51425 0.66 0.603797
Target:  5'- gGCGGCGCGCGCGagggcgauaccGUCaCGACGUcCg -3'
miRNA:   3'- -UGUCGCGUGCGCga---------CGGaGCUGCAaG- -5'
23923 3' -58.1 NC_005262.1 + 49687 0.66 0.595211
Target:  5'- gGCGGCGCGCGCaacCUGaaCCgCGACGg-- -3'
miRNA:   3'- -UGUCGCGUGCGc--GAC--GGaGCUGCaag -5'
23923 3' -58.1 NC_005262.1 + 49343 0.67 0.489737
Target:  5'- aGCAgGCGCGCGCcgcgcucGCUGacgaCUCGGCGa-- -3'
miRNA:   3'- -UGU-CGCGUGCG-------CGACg---GAGCUGCaag -5'
23923 3' -58.1 NC_005262.1 + 49223 0.67 0.500853
Target:  5'- uGCGGUGCGCGUGagcGCCgCGGCGa-- -3'
miRNA:   3'- -UGUCGCGUGCGCga-CGGaGCUGCaag -5'
23923 3' -58.1 NC_005262.1 + 49172 0.66 0.573841
Target:  5'- uGCGuUGCugGCucauGCUGCCUCGAaauCGUUUu -3'
miRNA:   3'- -UGUcGCGugCG----CGACGGAGCU---GCAAG- -5'
23923 3' -58.1 NC_005262.1 + 48195 0.66 0.573841
Target:  5'- cGCuccuGcCGCACGCGCU-CCUCGcGCGcgCg -3'
miRNA:   3'- -UGu---C-GCGUGCGCGAcGGAGC-UGCaaG- -5'
23923 3' -58.1 NC_005262.1 + 48095 0.69 0.395586
Target:  5'- -gAGCGCAUaGCGCUGCUcguccgucUCGGCGa-- -3'
miRNA:   3'- ugUCGCGUG-CGCGACGG--------AGCUGCaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.