miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23923 3' -58.1 NC_005262.1 + 47897 0.69 0.432246
Target:  5'- cGCGGCGCACGuCGCgcGCacgCGGCGg-- -3'
miRNA:   3'- -UGUCGCGUGC-GCGa-CGga-GCUGCaag -5'
23923 3' -58.1 NC_005262.1 + 46318 0.67 0.500853
Target:  5'- cGCGGCGCGCGCuucgucCUGgaaCUCGGCGa-- -3'
miRNA:   3'- -UGUCGCGUGCGc-----GACg--GAGCUGCaag -5'
23923 3' -58.1 NC_005262.1 + 44922 0.67 0.500853
Target:  5'- uGCGGCGCAagGCGCUGCUcCgGAUGcgCu -3'
miRNA:   3'- -UGUCGCGUg-CGCGACGGaG-CUGCaaG- -5'
23923 3' -58.1 NC_005262.1 + 44778 0.67 0.521341
Target:  5'- cCAGCGCGCG-GCagGCCgagcUCGACGa-- -3'
miRNA:   3'- uGUCGCGUGCgCGa-CGG----AGCUGCaag -5'
23923 3' -58.1 NC_005262.1 + 43748 0.67 0.511054
Target:  5'- --cGUGCGCGUGCUGaCCaCGAaGUUCg -3'
miRNA:   3'- uguCGCGUGCGCGAC-GGaGCUgCAAG- -5'
23923 3' -58.1 NC_005262.1 + 43212 0.72 0.263649
Target:  5'- uGCGGCGCgccGCGCGCUGC-UCGcCGggCu -3'
miRNA:   3'- -UGUCGCG---UGCGCGACGgAGCuGCaaG- -5'
23923 3' -58.1 NC_005262.1 + 41686 0.66 0.605946
Target:  5'- cCGGC-CACGUGCaGCaggUCGACGUUg -3'
miRNA:   3'- uGUCGcGUGCGCGaCGg--AGCUGCAAg -5'
23923 3' -58.1 NC_005262.1 + 41575 0.69 0.420113
Target:  5'- gGCGGCGCgGCcgugagcuugucgaGCGCgaGCC-CGGCGUUCu -3'
miRNA:   3'- -UGUCGCG-UG--------------CGCGa-CGGaGCUGCAAG- -5'
23923 3' -58.1 NC_005262.1 + 41545 0.69 0.413666
Target:  5'- gACGGCGUgAUGCGCagGCCggcCGGCGUg- -3'
miRNA:   3'- -UGUCGCG-UGCGCGa-CGGa--GCUGCAag -5'
23923 3' -58.1 NC_005262.1 + 41217 0.69 0.390263
Target:  5'- aGCAGCGC-CGCGCaugcggccgcuaagGCCggauggaGGCGUUCu -3'
miRNA:   3'- -UGUCGCGuGCGCGa-------------CGGag-----CUGCAAG- -5'
23923 3' -58.1 NC_005262.1 + 39594 0.68 0.451304
Target:  5'- cGCAGCGuCGCG-GCUgccGCCUCgGGCGUg- -3'
miRNA:   3'- -UGUCGC-GUGCgCGA---CGGAG-CUGCAag -5'
23923 3' -58.1 NC_005262.1 + 39405 0.67 0.490742
Target:  5'- cGCGGaCGUGCGCGCcGCCgguUUGGCGUc- -3'
miRNA:   3'- -UGUC-GCGUGCGCGaCGG---AGCUGCAag -5'
23923 3' -58.1 NC_005262.1 + 38865 0.7 0.344506
Target:  5'- cGCGGC-CAUGUGCgcaucccgccaUGCCUCGGCGUccUCc -3'
miRNA:   3'- -UGUCGcGUGCGCG-----------ACGGAGCUGCA--AG- -5'
23923 3' -58.1 NC_005262.1 + 36224 0.67 0.500853
Target:  5'- gGCAG-GCuucuCGCGCUGCg-CGGCGUccUCg -3'
miRNA:   3'- -UGUCgCGu---GCGCGACGgaGCUGCA--AG- -5'
23923 3' -58.1 NC_005262.1 + 35464 0.67 0.500853
Target:  5'- uGCAcGCGCACGgGCauccggaaccaUGCCUCGAUc--- -3'
miRNA:   3'- -UGU-CGCGUGCgCG-----------ACGGAGCUGcaag -5'
23923 3' -58.1 NC_005262.1 + 35391 0.66 0.563221
Target:  5'- cGCGGCGCucaauaccGCGCGCacgcuccaGCCcggCGACGUguUCg -3'
miRNA:   3'- -UGUCGCG--------UGCGCGa-------CGGa--GCUGCA--AG- -5'
23923 3' -58.1 NC_005262.1 + 35336 0.67 0.511054
Target:  5'- cGCAGUGCAUGCGCaucaUCGGCGa-- -3'
miRNA:   3'- -UGUCGCGUGCGCGacggAGCUGCaag -5'
23923 3' -58.1 NC_005262.1 + 35067 0.72 0.250717
Target:  5'- cACGGCGUccggGCGCGCgGCCUCGcgGCGg-- -3'
miRNA:   3'- -UGUCGCG----UGCGCGaCGGAGC--UGCaag -5'
23923 3' -58.1 NC_005262.1 + 34882 0.67 0.542147
Target:  5'- -gGGCGCGCucGCgagcauccucauGCUGCCgaagcaGACGUUCa -3'
miRNA:   3'- ugUCGCGUG--CG------------CGACGGag----CUGCAAG- -5'
23923 3' -58.1 NC_005262.1 + 34501 0.66 0.588785
Target:  5'- gGCGGCGCGCGacuucugcgagacgaCGCgGCUgUGGCGUUUu -3'
miRNA:   3'- -UGUCGCGUGC---------------GCGaCGGaGCUGCAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.