miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23923 3' -58.1 NC_005262.1 + 44778 0.67 0.521341
Target:  5'- cCAGCGCGCG-GCagGCCgagcUCGACGa-- -3'
miRNA:   3'- uGUCGCGUGCgCGa-CGG----AGCUGCaag -5'
23923 3' -58.1 NC_005262.1 + 32792 0.69 0.404563
Target:  5'- cCGGCG-GCGCGCcgGCCaUCG-CGUUCg -3'
miRNA:   3'- uGUCGCgUGCGCGa-CGG-AGCuGCAAG- -5'
23923 3' -58.1 NC_005262.1 + 10796 0.69 0.413666
Target:  5'- uACuGCuGCGCGaGCUGCCgCGACGaUCa -3'
miRNA:   3'- -UGuCG-CGUGCgCGACGGaGCUGCaAG- -5'
23923 3' -58.1 NC_005262.1 + 4561 0.69 0.426621
Target:  5'- cGCGGCGCAUcucgcgccagcggcgGCGCUGCUcgGGCGUg- -3'
miRNA:   3'- -UGUCGCGUG---------------CGCGACGGagCUGCAag -5'
23923 3' -58.1 NC_005262.1 + 4867 0.68 0.441717
Target:  5'- cGCGGCGCAgcuugccgaGCGCcgacucgaccUGCUUCGGCGUg- -3'
miRNA:   3'- -UGUCGCGUg--------CGCG----------ACGGAGCUGCAag -5'
23923 3' -58.1 NC_005262.1 + 28571 0.68 0.451304
Target:  5'- cGCcGCGCGCGCGacggcaUGCCcuaCGGCGUg- -3'
miRNA:   3'- -UGuCGCGUGCGCg-----ACGGa--GCUGCAag -5'
23923 3' -58.1 NC_005262.1 + 53371 0.68 0.461004
Target:  5'- uCGGCGcCAUGCGcCUGCCgcagacCG-CGUUCa -3'
miRNA:   3'- uGUCGC-GUGCGC-GACGGa-----GCuGCAAG- -5'
23923 3' -58.1 NC_005262.1 + 49343 0.67 0.489737
Target:  5'- aGCAgGCGCGCGCcgcgcucGCUGacgaCUCGGCGa-- -3'
miRNA:   3'- -UGU-CGCGUGCG-------CGACg---GAGCUGCaag -5'
23923 3' -58.1 NC_005262.1 + 43748 0.67 0.511054
Target:  5'- --cGUGCGCGUGCUGaCCaCGAaGUUCg -3'
miRNA:   3'- uguCGCGUGCGCGAC-GGaGCUgCAAG- -5'
23923 3' -58.1 NC_005262.1 + 5076 0.69 0.38674
Target:  5'- gGCGGCgGCGCGUGCgaccGgCUCGGCGg-- -3'
miRNA:   3'- -UGUCG-CGUGCGCGa---CgGAGCUGCaag -5'
23923 3' -58.1 NC_005262.1 + 56700 0.7 0.366893
Target:  5'- gACAGCGUgcgcucgcuggaggACGUGUccgagGCgUCGGCGUUCg -3'
miRNA:   3'- -UGUCGCG--------------UGCGCGa----CGgAGCUGCAAG- -5'
23923 3' -58.1 NC_005262.1 + 13691 0.71 0.313177
Target:  5'- cGCGGUGCugGCGCgugaggucgaagUGCCU-GACGUg- -3'
miRNA:   3'- -UGUCGCGugCGCG------------ACGGAgCUGCAag -5'
23923 3' -58.1 NC_005262.1 + 11946 0.76 0.15666
Target:  5'- cAUGGCGCACGCGCUGgggaUCGACGg-- -3'
miRNA:   3'- -UGUCGCGUGCGCGACgg--AGCUGCaag -5'
23923 3' -58.1 NC_005262.1 + 211 0.74 0.215045
Target:  5'- cGCAGCGCGCGCacgaGCaUGCCguaCGGCGUc- -3'
miRNA:   3'- -UGUCGCGUGCG----CG-ACGGa--GCUGCAag -5'
23923 3' -58.1 NC_005262.1 + 61790 0.73 0.220673
Target:  5'- cCAGCGCguuuucgccugcGCgGCGCaUGCCUCGGCGcUCg -3'
miRNA:   3'- uGUCGCG------------UG-CGCG-ACGGAGCUGCaAG- -5'
23923 3' -58.1 NC_005262.1 + 2020 0.73 0.238313
Target:  5'- cACGGCGCugcuuCGUGCUGC-UCGACGg-- -3'
miRNA:   3'- -UGUCGCGu----GCGCGACGgAGCUGCaag -5'
23923 3' -58.1 NC_005262.1 + 21688 0.72 0.263649
Target:  5'- gGCGGCGC-CGCGCUGCUguaCG-CGggCa -3'
miRNA:   3'- -UGUCGCGuGCGCGACGGa--GCuGCaaG- -5'
23923 3' -58.1 NC_005262.1 + 19446 0.72 0.284056
Target:  5'- -aAGCGCugGgCGUUgGCCUCGAUGcUCa -3'
miRNA:   3'- ugUCGCGugC-GCGA-CGGAGCUGCaAG- -5'
23923 3' -58.1 NC_005262.1 + 28165 0.72 0.284056
Target:  5'- cGCGGCGCaacuGCGCGCggcgGCCgUCGACa--- -3'
miRNA:   3'- -UGUCGCG----UGCGCGa---CGG-AGCUGcaag -5'
23923 3' -58.1 NC_005262.1 + 10589 0.71 0.29113
Target:  5'- aGCAGCGCgGCGCGagcgGCUUCGAUGa-- -3'
miRNA:   3'- -UGUCGCG-UGCGCga--CGGAGCUGCaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.