Results 41 - 60 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23923 | 3' | -58.1 | NC_005262.1 | + | 32792 | 0.69 | 0.404563 |
Target: 5'- cCGGCG-GCGCGCcgGCCaUCG-CGUUCg -3' miRNA: 3'- uGUCGCgUGCGCGa-CGG-AGCuGCAAG- -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 5076 | 0.69 | 0.38674 |
Target: 5'- gGCGGCgGCGCGUGCgaccGgCUCGGCGg-- -3' miRNA: 3'- -UGUCG-CGUGCGCGa---CgGAGCUGCaag -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 49223 | 0.67 | 0.500853 |
Target: 5'- uGCGGUGCGCGUGagcGCCgCGGCGa-- -3' miRNA: 3'- -UGUCGCGUGCGCga-CGGaGCUGCaag -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 46318 | 0.67 | 0.500853 |
Target: 5'- cGCGGCGCGCGCuucgucCUGgaaCUCGGCGa-- -3' miRNA: 3'- -UGUCGCGUGCGc-----GACg--GAGCUGCaag -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 44922 | 0.67 | 0.500853 |
Target: 5'- uGCGGCGCAagGCGCUGCUcCgGAUGcgCu -3' miRNA: 3'- -UGUCGCGUg-CGCGACGGaG-CUGCaaG- -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 36224 | 0.67 | 0.500853 |
Target: 5'- gGCAG-GCuucuCGCGCUGCg-CGGCGUccUCg -3' miRNA: 3'- -UGUCgCGu---GCGCGACGgaGCUGCA--AG- -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 374 | 0.67 | 0.500853 |
Target: 5'- --cGCGCAUG-GUUGCCUCGGCu--- -3' miRNA: 3'- uguCGCGUGCgCGACGGAGCUGcaag -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 35464 | 0.67 | 0.500853 |
Target: 5'- uGCAcGCGCACGgGCauccggaaccaUGCCUCGAUc--- -3' miRNA: 3'- -UGU-CGCGUGCgCG-----------ACGGAGCUGcaag -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 447 | 0.67 | 0.49781 |
Target: 5'- -gAGCGCAUgauccgccuugaggGCGUUGaCCUCGGCGa-- -3' miRNA: 3'- ugUCGCGUG--------------CGCGAC-GGAGCUGCaag -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 52970 | 0.67 | 0.490742 |
Target: 5'- cGCGGCGgACGCGCaUGCgCUgGuCGUgaUCg -3' miRNA: 3'- -UGUCGCgUGCGCG-ACG-GAgCuGCA--AG- -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 35336 | 0.67 | 0.511054 |
Target: 5'- cGCAGUGCAUGCGCaucaUCGGCGa-- -3' miRNA: 3'- -UGUCGCGUGCGCGacggAGCUGCaag -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 13531 | 0.67 | 0.511054 |
Target: 5'- cCGGCGCGgGCGC-GCCcucguugCGGCGgUCg -3' miRNA: 3'- uGUCGCGUgCGCGaCGGa------GCUGCaAG- -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 31491 | 1.09 | 0.000548 |
Target: 5'- aACAGCGCACGCGCUGCCUCGACGUUCg -3' miRNA: 3'- -UGUCGCGUGCGCGACGGAGCUGCAAG- -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 27664 | 0.66 | 0.595211 |
Target: 5'- --cGCGCugGCgguGCUcGCCUCGcCGUaUCg -3' miRNA: 3'- uguCGCGugCG---CGA-CGGAGCuGCA-AG- -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 20061 | 0.66 | 0.584507 |
Target: 5'- aGCAcGCGCACGauCGCgGUUUCGACcUUCu -3' miRNA: 3'- -UGU-CGCGUGC--GCGaCGGAGCUGcAAG- -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 59957 | 0.66 | 0.584507 |
Target: 5'- aGCGGCacguCACGCGCgggGCgCUCGGCa--- -3' miRNA: 3'- -UGUCGc---GUGCGCGa--CG-GAGCUGcaag -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 49172 | 0.66 | 0.573841 |
Target: 5'- uGCGuUGCugGCucauGCUGCCUCGAaauCGUUUu -3' miRNA: 3'- -UGUcGCGugCG----CGACGGAGCU---GCAAG- -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 48195 | 0.66 | 0.573841 |
Target: 5'- cGCuccuGcCGCACGCGCU-CCUCGcGCGcgCg -3' miRNA: 3'- -UGu---C-GCGUGCGCGAcGGAGC-UGCaaG- -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 2932 | 0.66 | 0.563221 |
Target: 5'- --cGCGCuuucgcCGCGCauUGCCUCGGCcaUCg -3' miRNA: 3'- uguCGCGu-----GCGCG--ACGGAGCUGcaAG- -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 52241 | 0.67 | 0.546342 |
Target: 5'- aGCAGCGCGCGUgaugcacuucagccgGCgagcgGCCgagUCGcAUGUUCa -3' miRNA: 3'- -UGUCGCGUGCG---------------CGa----CGG---AGC-UGCAAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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