miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23923 3' -58.1 NC_005262.1 + 41686 0.66 0.605946
Target:  5'- cCGGC-CACGUGCaGCaggUCGACGUUg -3'
miRNA:   3'- uGUCGcGUGCGCGaCGg--AGCUGCAAg -5'
23923 3' -58.1 NC_005262.1 + 52970 0.67 0.490742
Target:  5'- cGCGGCGgACGCGCaUGCgCUgGuCGUgaUCg -3'
miRNA:   3'- -UGUCGCgUGCGCG-ACG-GAgCuGCA--AG- -5'
23923 3' -58.1 NC_005262.1 + 19893 0.67 0.490742
Target:  5'- -uGGCGC-CGCGCUGaCCgccuUCGAC-UUCa -3'
miRNA:   3'- ugUCGCGuGCGCGAC-GG----AGCUGcAAG- -5'
23923 3' -58.1 NC_005262.1 + 31491 1.09 0.000548
Target:  5'- aACAGCGCACGCGCUGCCUCGACGUUCg -3'
miRNA:   3'- -UGUCGCGUGCGCGACGGAGCUGCAAG- -5'
23923 3' -58.1 NC_005262.1 + 49172 0.66 0.573841
Target:  5'- uGCGuUGCugGCucauGCUGCCUCGAaauCGUUUu -3'
miRNA:   3'- -UGUcGCGugCG----CGACGGAGCU---GCAAG- -5'
23923 3' -58.1 NC_005262.1 + 48195 0.66 0.573841
Target:  5'- cGCuccuGcCGCACGCGCU-CCUCGcGCGcgCg -3'
miRNA:   3'- -UGu---C-GCGUGCGCGAcGGAGC-UGCaaG- -5'
23923 3' -58.1 NC_005262.1 + 52241 0.67 0.546342
Target:  5'- aGCAGCGCGCGUgaugcacuucagccgGCgagcgGCCgagUCGcAUGUUCa -3'
miRNA:   3'- -UGUCGCGUGCG---------------CGa----CGG---AGC-UGCAAG- -5'
23923 3' -58.1 NC_005262.1 + 13531 0.67 0.511054
Target:  5'- cCGGCGCGgGCGC-GCCcucguugCGGCGgUCg -3'
miRNA:   3'- uGUCGCGUgCGCGaCGGa------GCUGCaAG- -5'
23923 3' -58.1 NC_005262.1 + 46318 0.67 0.500853
Target:  5'- cGCGGCGCGCGCuucgucCUGgaaCUCGGCGa-- -3'
miRNA:   3'- -UGUCGCGUGCGc-----GACg--GAGCUGCaag -5'
23923 3' -58.1 NC_005262.1 + 447 0.67 0.49781
Target:  5'- -gAGCGCAUgauccgccuugaggGCGUUGaCCUCGGCGa-- -3'
miRNA:   3'- ugUCGCGUG--------------CGCGAC-GGAGCUGCaag -5'
23923 3' -58.1 NC_005262.1 + 36224 0.67 0.500853
Target:  5'- gGCAG-GCuucuCGCGCUGCg-CGGCGUccUCg -3'
miRNA:   3'- -UGUCgCGu---GCGCGACGgaGCUGCA--AG- -5'
23923 3' -58.1 NC_005262.1 + 49223 0.67 0.500853
Target:  5'- uGCGGUGCGCGUGagcGCCgCGGCGa-- -3'
miRNA:   3'- -UGUCGCGUGCGCga-CGGaGCUGCaag -5'
23923 3' -58.1 NC_005262.1 + 27664 0.66 0.595211
Target:  5'- --cGCGCugGCgguGCUcGCCUCGcCGUaUCg -3'
miRNA:   3'- uguCGCGugCG---CGA-CGGAGCuGCA-AG- -5'
23923 3' -58.1 NC_005262.1 + 374 0.67 0.500853
Target:  5'- --cGCGCAUG-GUUGCCUCGGCu--- -3'
miRNA:   3'- uguCGCGUGCgCGACGGAGCUGcaag -5'
23923 3' -58.1 NC_005262.1 + 20061 0.66 0.584507
Target:  5'- aGCAcGCGCACGauCGCgGUUUCGACcUUCu -3'
miRNA:   3'- -UGU-CGCGUGC--GCGaCGGAGCUGcAAG- -5'
23923 3' -58.1 NC_005262.1 + 35336 0.67 0.511054
Target:  5'- cGCAGUGCAUGCGCaucaUCGGCGa-- -3'
miRNA:   3'- -UGUCGCGUGCGCGacggAGCUGCaag -5'
23923 3' -58.1 NC_005262.1 + 35464 0.67 0.500853
Target:  5'- uGCAcGCGCACGgGCauccggaaccaUGCCUCGAUc--- -3'
miRNA:   3'- -UGU-CGCGUGCgCG-----------ACGGAGCUGcaag -5'
23923 3' -58.1 NC_005262.1 + 39405 0.67 0.490742
Target:  5'- cGCGGaCGUGCGCGCcGCCgguUUGGCGUc- -3'
miRNA:   3'- -UGUC-GCGUGCGCGaCGG---AGCUGCAag -5'
23923 3' -58.1 NC_005262.1 + 59957 0.66 0.584507
Target:  5'- aGCGGCacguCACGCGCgggGCgCUCGGCa--- -3'
miRNA:   3'- -UGUCGc---GUGCGCGa--CG-GAGCUGcaag -5'
23923 3' -58.1 NC_005262.1 + 2932 0.66 0.563221
Target:  5'- --cGCGCuuucgcCGCGCauUGCCUCGGCcaUCg -3'
miRNA:   3'- uguCGCGu-----GCGCG--ACGGAGCUGcaAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.