Results 21 - 40 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23923 | 3' | -58.1 | NC_005262.1 | + | 29217 | 0.68 | 0.480728 |
Target: 5'- cACGGCGCcgcACgGCGC-GCacaCGACGUUCg -3' miRNA: 3'- -UGUCGCG---UG-CGCGaCGga-GCUGCAAG- -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 19893 | 0.67 | 0.490742 |
Target: 5'- -uGGCGC-CGCGCUGaCCgccuUCGAC-UUCa -3' miRNA: 3'- ugUCGCGuGCGCGAC-GG----AGCUGcAAG- -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 49223 | 0.67 | 0.500853 |
Target: 5'- uGCGGUGCGCGUGagcGCCgCGGCGa-- -3' miRNA: 3'- -UGUCGCGUGCGCga-CGGaGCUGCaag -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 59957 | 0.66 | 0.584507 |
Target: 5'- aGCGGCacguCACGCGCgggGCgCUCGGCa--- -3' miRNA: 3'- -UGUCGc---GUGCGCGa--CG-GAGCUGcaag -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 47897 | 0.69 | 0.432246 |
Target: 5'- cGCGGCGCACGuCGCgcGCacgCGGCGg-- -3' miRNA: 3'- -UGUCGCGUGC-GCGa-CGga-GCUGCaag -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 6573 | 0.68 | 0.461004 |
Target: 5'- gGCGGCGCGCGuCGCgaUGCCgcCGACc--- -3' miRNA: 3'- -UGUCGCGUGC-GCG--ACGGa-GCUGcaag -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 52970 | 0.67 | 0.490742 |
Target: 5'- cGCGGCGgACGCGCaUGCgCUgGuCGUgaUCg -3' miRNA: 3'- -UGUCGCgUGCGCG-ACG-GAgCuGCA--AG- -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 20061 | 0.66 | 0.584507 |
Target: 5'- aGCAcGCGCACGauCGCgGUUUCGACcUUCu -3' miRNA: 3'- -UGU-CGCGUGC--GCGaCGGAGCUGcAAG- -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 20214 | 0.68 | 0.470814 |
Target: 5'- --uGCGUuCGCGCUGaCCUCGACc--- -3' miRNA: 3'- uguCGCGuGCGCGAC-GGAGCUGcaag -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 27664 | 0.66 | 0.595211 |
Target: 5'- --cGCGCugGCgguGCUcGCCUCGcCGUaUCg -3' miRNA: 3'- uguCGCGugCG---CGA-CGGAGCuGCA-AG- -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 39405 | 0.67 | 0.490742 |
Target: 5'- cGCGGaCGUGCGCGCcGCCgguUUGGCGUc- -3' miRNA: 3'- -UGUC-GCGUGCGCGaCGG---AGCUGCAag -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 11950 | 0.68 | 0.480728 |
Target: 5'- cGCGGCGC-CGCGCUucaGCacuucgCGACGUc- -3' miRNA: 3'- -UGUCGCGuGCGCGA---CGga----GCUGCAag -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 374 | 0.67 | 0.500853 |
Target: 5'- --cGCGCAUG-GUUGCCUCGGCu--- -3' miRNA: 3'- uguCGCGUGCgCGACGGAGCUGcaag -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 46318 | 0.67 | 0.500853 |
Target: 5'- cGCGGCGCGCGCuucgucCUGgaaCUCGGCGa-- -3' miRNA: 3'- -UGUCGCGUGCGc-----GACg--GAGCUGCaag -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 52241 | 0.67 | 0.546342 |
Target: 5'- aGCAGCGCGCGUgaugcacuucagccgGCgagcgGCCgagUCGcAUGUUCa -3' miRNA: 3'- -UGUCGCGUGCG---------------CGa----CGG---AGC-UGCAAG- -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 49172 | 0.66 | 0.573841 |
Target: 5'- uGCGuUGCugGCucauGCUGCCUCGAaauCGUUUu -3' miRNA: 3'- -UGUcGCGugCG----CGACGGAGCU---GCAAG- -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 41575 | 0.69 | 0.420113 |
Target: 5'- gGCGGCGCgGCcgugagcuugucgaGCGCgaGCC-CGGCGUUCu -3' miRNA: 3'- -UGUCGCG-UG--------------CGCGa-CGGaGCUGCAAG- -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 13822 | 0.69 | 0.432246 |
Target: 5'- -gAGCGgGCGcCGCUGUCUCGucgGCGaUCg -3' miRNA: 3'- ugUCGCgUGC-GCGACGGAGC---UGCaAG- -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 9397 | 0.68 | 0.451304 |
Target: 5'- aGCuuGCGCACGaCGUUGCC-CGACa--- -3' miRNA: 3'- -UGu-CGCGUGC-GCGACGGaGCUGcaag -5' |
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23923 | 3' | -58.1 | NC_005262.1 | + | 39594 | 0.68 | 0.451304 |
Target: 5'- cGCAGCGuCGCG-GCUgccGCCUCgGGCGUg- -3' miRNA: 3'- -UGUCGC-GUGCgCGA---CGGAG-CUGCAag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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