miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23923 5' -46 NC_005262.1 + 32974 0.66 0.998507
Target:  5'- -cGAUCGgcgUGAAGaucacGGUCGCGgcGCa -3'
miRNA:   3'- caUUAGCa--ACUUCgc---CUAGUGCaaCG- -5'
23923 5' -46 NC_005262.1 + 29189 0.66 0.998173
Target:  5'- uGUAGUCGcaccgcucGAucucGUGGAUCACGgcGCc -3'
miRNA:   3'- -CAUUAGCaa------CUu---CGCCUAGUGCaaCG- -5'
23923 5' -46 NC_005262.1 + 1906 0.66 0.998173
Target:  5'- ---uUCGagcGggGCGGAgggugCGgGUUGCg -3'
miRNA:   3'- cauuAGCaa-CuuCGCCUa----GUgCAACG- -5'
23923 5' -46 NC_005262.1 + 23177 0.66 0.998173
Target:  5'- -gGGUCGUUGAcGcCGuGAUUAUGcUGCg -3'
miRNA:   3'- caUUAGCAACUuC-GC-CUAGUGCaACG- -5'
23923 5' -46 NC_005262.1 + 29749 0.66 0.997943
Target:  5'- cUGGUCGUcGAGcaacugccgaucgacGCGGcgCACGaUGCg -3'
miRNA:   3'- cAUUAGCAaCUU---------------CGCCuaGUGCaACG- -5'
23923 5' -46 NC_005262.1 + 6556 0.66 0.99677
Target:  5'- -aGGUUGUucaccUGAuuGGCGGcgCGCGUcGCg -3'
miRNA:   3'- caUUAGCA-----ACU--UCGCCuaGUGCAaCG- -5'
23923 5' -46 NC_005262.1 + 22780 0.69 0.977729
Target:  5'- ----cCGggcUGAAGCGaGAUCGCGgUGCc -3'
miRNA:   3'- cauuaGCa--ACUUCGC-CUAGUGCaACG- -5'
23923 5' -46 NC_005262.1 + 10882 0.7 0.972207
Target:  5'- --cGUCGUaGAucgAGCGGAUCACGcccucgcugguguagUGCg -3'
miRNA:   3'- cauUAGCAaCU---UCGCCUAGUGCa--------------ACG- -5'
23923 5' -46 NC_005262.1 + 16681 0.71 0.942928
Target:  5'- ----aCGUUGAAGCcGGUgAUGUUGCc -3'
miRNA:   3'- cauuaGCAACUUCGcCUAgUGCAACG- -5'
23923 5' -46 NC_005262.1 + 2942 0.71 0.937617
Target:  5'- uGUGAUCGcucgcucuaUGggGCGGGcacUCACGcUGCc -3'
miRNA:   3'- -CAUUAGCa--------ACuuCGCCU---AGUGCaACG- -5'
23923 5' -46 NC_005262.1 + 17736 0.73 0.884117
Target:  5'- aGUAGUCGgcacggUGAAGCGGGcggacgaCACGcUGCu -3'
miRNA:   3'- -CAUUAGCa-----ACUUCGCCUa------GUGCaACG- -5'
23923 5' -46 NC_005262.1 + 35186 0.76 0.786086
Target:  5'- --cGUCGUccugcaugccgcgcaUGAAGCGGAUCACGccGUa -3'
miRNA:   3'- cauUAGCA---------------ACUUCGCCUAGUGCaaCG- -5'
23923 5' -46 NC_005262.1 + 31528 1.15 0.004853
Target:  5'- cGUAAUCGUUGAAGCGGAUCACGUUGCg -3'
miRNA:   3'- -CAUUAGCAACUUCGCCUAGUGCAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.