miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23924 5' -56.6 NC_005262.1 + 32827 0.66 0.71834
Target:  5'- cUCaUGUCCGGCGaCgUCGGCGACaaGGUu -3'
miRNA:   3'- -AGaACGGGCCGUaG-AGCUGCUG--CCAc -5'
23924 5' -56.6 NC_005262.1 + 47233 0.66 0.707873
Target:  5'- --cUGCUCGGCAUC-CG-CGGCcGUGa -3'
miRNA:   3'- agaACGGGCCGUAGaGCuGCUGcCAC- -5'
23924 5' -56.6 NC_005262.1 + 22301 0.66 0.676086
Target:  5'- ---gGCCCGGa---UCGGUGACGGUGu -3'
miRNA:   3'- agaaCGGGCCguagAGCUGCUGCCAC- -5'
23924 5' -56.6 NC_005262.1 + 62683 0.66 0.673952
Target:  5'- ---cGCCCGGCggCggcaggggagcgCGACGAUGGg- -3'
miRNA:   3'- agaaCGGGCCGuaGa-----------GCUGCUGCCac -5'
23924 5' -56.6 NC_005262.1 + 6354 0.67 0.65468
Target:  5'- ---cGCCgCGGCAUC-CG-CGgACGGUGc -3'
miRNA:   3'- agaaCGG-GCCGUAGaGCuGC-UGCCAC- -5'
23924 5' -56.6 NC_005262.1 + 57085 0.67 0.648239
Target:  5'- aCggGCCCGGCAUCauggaagugaagaaCGuCGACGGg- -3'
miRNA:   3'- aGaaCGGGCCGUAGa-------------GCuGCUGCCac -5'
23924 5' -56.6 NC_005262.1 + 58462 0.67 0.643942
Target:  5'- --gUGCgCGGCGUCaCGACGuCGGa- -3'
miRNA:   3'- agaACGgGCCGUAGaGCUGCuGCCac -5'
23924 5' -56.6 NC_005262.1 + 4668 0.67 0.622444
Target:  5'- aCgcgGCCCGGCcgguucgcCUCGGCG-CGGUa -3'
miRNA:   3'- aGaa-CGGGCCGua------GAGCUGCuGCCAc -5'
23924 5' -56.6 NC_005262.1 + 30510 0.68 0.600979
Target:  5'- ---cGCCCGGCGUgCgcgCGAUG-CGGUa -3'
miRNA:   3'- agaaCGGGCCGUA-Ga--GCUGCuGCCAc -5'
23924 5' -56.6 NC_005262.1 + 57456 0.68 0.59028
Target:  5'- --aUGCCgCGGCGg--CGACGAUGGa- -3'
miRNA:   3'- agaACGG-GCCGUagaGCUGCUGCCac -5'
23924 5' -56.6 NC_005262.1 + 11292 0.68 0.568991
Target:  5'- uUCaUGCuCUGGCGUCgUCGGgaggGACGGUGa -3'
miRNA:   3'- -AGaACG-GGCCGUAG-AGCUg---CUGCCAC- -5'
23924 5' -56.6 NC_005262.1 + 25365 0.68 0.568991
Target:  5'- ---cGUCCGGCGugaUCUCGACcgcgccggccugGAUGGUGu -3'
miRNA:   3'- agaaCGGGCCGU---AGAGCUG------------CUGCCAC- -5'
23924 5' -56.6 NC_005262.1 + 49074 0.69 0.527057
Target:  5'- gUCUUGCa-GGCugucgAUCUCGACGAgcaucaccuucuCGGUGa -3'
miRNA:   3'- -AGAACGggCCG-----UAGAGCUGCU------------GCCAC- -5'
23924 5' -56.6 NC_005262.1 + 14356 0.69 0.50652
Target:  5'- gCUUGCgC-GCGUCgacUGGCGGCGGUGa -3'
miRNA:   3'- aGAACGgGcCGUAGa--GCUGCUGCCAC- -5'
23924 5' -56.6 NC_005262.1 + 49849 0.69 0.496379
Target:  5'- ---gGCCCGGUG-C-CGGCGGCGGUa -3'
miRNA:   3'- agaaCGGGCCGUaGaGCUGCUGCCAc -5'
23924 5' -56.6 NC_005262.1 + 20709 0.71 0.391871
Target:  5'- cUCUUGCCCGGuCAggUCGAUGAUGa-- -3'
miRNA:   3'- -AGAACGGGCC-GUagAGCUGCUGCcac -5'
23924 5' -56.6 NC_005262.1 + 22326 0.72 0.374455
Target:  5'- --gUGCgCCGGCAUCUgGGCuGCGGUc -3'
miRNA:   3'- agaACG-GGCCGUAGAgCUGcUGCCAc -5'
23924 5' -56.6 NC_005262.1 + 12425 0.75 0.248332
Target:  5'- cCUUGgCCGGCGUCgcggaCGGCG-CGGUGc -3'
miRNA:   3'- aGAACgGGCCGUAGa----GCUGCuGCCAC- -5'
23924 5' -56.6 NC_005262.1 + 5161 0.78 0.15945
Target:  5'- ---cGCCCGGCcgCUCGACugccgagccuGACGGUGc -3'
miRNA:   3'- agaaCGGGCCGuaGAGCUG----------CUGCCAC- -5'
23924 5' -56.6 NC_005262.1 + 30629 1.08 0.001173
Target:  5'- gUCUUGCCCGGCAUCUCGACGACGGUGc -3'
miRNA:   3'- -AGAACGGGCCGUAGAGCUGCUGCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.