Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23924 | 5' | -56.6 | NC_005262.1 | + | 32827 | 0.66 | 0.71834 |
Target: 5'- cUCaUGUCCGGCGaCgUCGGCGACaaGGUu -3' miRNA: 3'- -AGaACGGGCCGUaG-AGCUGCUG--CCAc -5' |
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23924 | 5' | -56.6 | NC_005262.1 | + | 22301 | 0.66 | 0.676086 |
Target: 5'- ---gGCCCGGa---UCGGUGACGGUGu -3' miRNA: 3'- agaaCGGGCCguagAGCUGCUGCCAC- -5' |
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23924 | 5' | -56.6 | NC_005262.1 | + | 47233 | 0.66 | 0.707873 |
Target: 5'- --cUGCUCGGCAUC-CG-CGGCcGUGa -3' miRNA: 3'- agaACGGGCCGUAGaGCuGCUGcCAC- -5' |
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23924 | 5' | -56.6 | NC_005262.1 | + | 62683 | 0.66 | 0.673952 |
Target: 5'- ---cGCCCGGCggCggcaggggagcgCGACGAUGGg- -3' miRNA: 3'- agaaCGGGCCGuaGa-----------GCUGCUGCCac -5' |
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23924 | 5' | -56.6 | NC_005262.1 | + | 4668 | 0.67 | 0.622444 |
Target: 5'- aCgcgGCCCGGCcgguucgcCUCGGCG-CGGUa -3' miRNA: 3'- aGaa-CGGGCCGua------GAGCUGCuGCCAc -5' |
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23924 | 5' | -56.6 | NC_005262.1 | + | 6354 | 0.67 | 0.65468 |
Target: 5'- ---cGCCgCGGCAUC-CG-CGgACGGUGc -3' miRNA: 3'- agaaCGG-GCCGUAGaGCuGC-UGCCAC- -5' |
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23924 | 5' | -56.6 | NC_005262.1 | + | 57085 | 0.67 | 0.648239 |
Target: 5'- aCggGCCCGGCAUCauggaagugaagaaCGuCGACGGg- -3' miRNA: 3'- aGaaCGGGCCGUAGa-------------GCuGCUGCCac -5' |
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23924 | 5' | -56.6 | NC_005262.1 | + | 58462 | 0.67 | 0.643942 |
Target: 5'- --gUGCgCGGCGUCaCGACGuCGGa- -3' miRNA: 3'- agaACGgGCCGUAGaGCUGCuGCCac -5' |
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23924 | 5' | -56.6 | NC_005262.1 | + | 57456 | 0.68 | 0.59028 |
Target: 5'- --aUGCCgCGGCGg--CGACGAUGGa- -3' miRNA: 3'- agaACGG-GCCGUagaGCUGCUGCCac -5' |
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23924 | 5' | -56.6 | NC_005262.1 | + | 11292 | 0.68 | 0.568991 |
Target: 5'- uUCaUGCuCUGGCGUCgUCGGgaggGACGGUGa -3' miRNA: 3'- -AGaACG-GGCCGUAG-AGCUg---CUGCCAC- -5' |
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23924 | 5' | -56.6 | NC_005262.1 | + | 25365 | 0.68 | 0.568991 |
Target: 5'- ---cGUCCGGCGugaUCUCGACcgcgccggccugGAUGGUGu -3' miRNA: 3'- agaaCGGGCCGU---AGAGCUG------------CUGCCAC- -5' |
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23924 | 5' | -56.6 | NC_005262.1 | + | 30510 | 0.68 | 0.600979 |
Target: 5'- ---cGCCCGGCGUgCgcgCGAUG-CGGUa -3' miRNA: 3'- agaaCGGGCCGUA-Ga--GCUGCuGCCAc -5' |
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23924 | 5' | -56.6 | NC_005262.1 | + | 49074 | 0.69 | 0.527057 |
Target: 5'- gUCUUGCa-GGCugucgAUCUCGACGAgcaucaccuucuCGGUGa -3' miRNA: 3'- -AGAACGggCCG-----UAGAGCUGCU------------GCCAC- -5' |
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23924 | 5' | -56.6 | NC_005262.1 | + | 49849 | 0.69 | 0.496379 |
Target: 5'- ---gGCCCGGUG-C-CGGCGGCGGUa -3' miRNA: 3'- agaaCGGGCCGUaGaGCUGCUGCCAc -5' |
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23924 | 5' | -56.6 | NC_005262.1 | + | 14356 | 0.69 | 0.50652 |
Target: 5'- gCUUGCgC-GCGUCgacUGGCGGCGGUGa -3' miRNA: 3'- aGAACGgGcCGUAGa--GCUGCUGCCAC- -5' |
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23924 | 5' | -56.6 | NC_005262.1 | + | 20709 | 0.71 | 0.391871 |
Target: 5'- cUCUUGCCCGGuCAggUCGAUGAUGa-- -3' miRNA: 3'- -AGAACGGGCC-GUagAGCUGCUGCcac -5' |
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23924 | 5' | -56.6 | NC_005262.1 | + | 22326 | 0.72 | 0.374455 |
Target: 5'- --gUGCgCCGGCAUCUgGGCuGCGGUc -3' miRNA: 3'- agaACG-GGCCGUAGAgCUGcUGCCAc -5' |
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23924 | 5' | -56.6 | NC_005262.1 | + | 12425 | 0.75 | 0.248332 |
Target: 5'- cCUUGgCCGGCGUCgcggaCGGCG-CGGUGc -3' miRNA: 3'- aGAACgGGCCGUAGa----GCUGCuGCCAC- -5' |
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23924 | 5' | -56.6 | NC_005262.1 | + | 5161 | 0.78 | 0.15945 |
Target: 5'- ---cGCCCGGCcgCUCGACugccgagccuGACGGUGc -3' miRNA: 3'- agaaCGGGCCGuaGAGCUG----------CUGCCAC- -5' |
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23924 | 5' | -56.6 | NC_005262.1 | + | 30629 | 1.08 | 0.001173 |
Target: 5'- gUCUUGCCCGGCAUCUCGACGACGGUGc -3' miRNA: 3'- -AGAACGGGCCGUAGAGCUGCUGCCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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