miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23925 3' -55.6 NC_005262.1 + 29580 0.66 0.770762
Target:  5'- cGAGCGUgucGCCCGAAgCCgcgaucgCGGGCGg -3'
miRNA:   3'- -CUCGCAgucCGGGCUUaGGa------GCUUGC- -5'
23925 3' -55.6 NC_005262.1 + 17841 0.66 0.770762
Target:  5'- cGAGCGggaaCAGGUacUCGAugccGUCCUCGA-CGu -3'
miRNA:   3'- -CUCGCa---GUCCG--GGCU----UAGGAGCUuGC- -5'
23925 3' -55.6 NC_005262.1 + 39596 0.66 0.76075
Target:  5'- cAGCGUCGcGGCUgccg-CCUCGGGCGu -3'
miRNA:   3'- cUCGCAGU-CCGGgcuuaGGAGCUUGC- -5'
23925 3' -55.6 NC_005262.1 + 35069 0.66 0.76075
Target:  5'- cGGCGUcCGGGCgCGcggCCUCGcGGCGg -3'
miRNA:   3'- cUCGCA-GUCCGgGCuuaGGAGC-UUGC- -5'
23925 3' -55.6 NC_005262.1 + 3790 0.66 0.76075
Target:  5'- gGAGCcgGUCGGaaCCCGGccAUCCUCG-ACGg -3'
miRNA:   3'- -CUCG--CAGUCc-GGGCU--UAGGAGCuUGC- -5'
23925 3' -55.6 NC_005262.1 + 35713 0.66 0.759742
Target:  5'- cGGCGUCGgcgggacGGCCaCGcuGAUCCUCGcAUGg -3'
miRNA:   3'- cUCGCAGU-------CCGG-GC--UUAGGAGCuUGC- -5'
23925 3' -55.6 NC_005262.1 + 6075 0.66 0.759742
Target:  5'- -uGCGUCAGGCCgCGGccuucUUCUCGGugauccgcacguuGCGg -3'
miRNA:   3'- cuCGCAGUCCGG-GCUu----AGGAGCU-------------UGC- -5'
23925 3' -55.6 NC_005262.1 + 11634 0.66 0.740355
Target:  5'- cGGCGUCgAGGCCgGggUaguugcgcgccgCCUCccaGAACGa -3'
miRNA:   3'- cUCGCAG-UCCGGgCuuA------------GGAG---CUUGC- -5'
23925 3' -55.6 NC_005262.1 + 28967 0.66 0.740355
Target:  5'- cGAGgaaGUCGGGgagCUGAucggcAUCCUCGGACGg -3'
miRNA:   3'- -CUCg--CAGUCCg--GGCU-----UAGGAGCUUGC- -5'
23925 3' -55.6 NC_005262.1 + 3892 0.66 0.740355
Target:  5'- aAGCGUCAGGCuuGca---UCGAGCu -3'
miRNA:   3'- cUCGCAGUCCGggCuuaggAGCUUGc -5'
23925 3' -55.6 NC_005262.1 + 13221 0.66 0.729993
Target:  5'- uGAGCGgcagCGGGCUCGGG-CUgcggUUGAACGg -3'
miRNA:   3'- -CUCGCa---GUCCGGGCUUaGG----AGCUUGC- -5'
23925 3' -55.6 NC_005262.1 + 9812 0.66 0.719536
Target:  5'- aGGCGUCguAGGCaucgCCGAGcgUCUUGAGCGa -3'
miRNA:   3'- cUCGCAG--UCCG----GGCUUa-GGAGCUUGC- -5'
23925 3' -55.6 NC_005262.1 + 18076 0.66 0.719536
Target:  5'- -cGCGcUCGaacuGGCUCGAAUgCCUCGAAgCGg -3'
miRNA:   3'- cuCGC-AGU----CCGGGCUUA-GGAGCUU-GC- -5'
23925 3' -55.6 NC_005262.1 + 20495 0.67 0.698381
Target:  5'- cGGGCGUCAucaGCaCCGAGcCCUCGAuCa -3'
miRNA:   3'- -CUCGCAGUc--CG-GGCUUaGGAGCUuGc -5'
23925 3' -55.6 NC_005262.1 + 33177 0.67 0.698381
Target:  5'- cGAGCGUCGgcggcGGCUCG-AUCUUCGcGCc -3'
miRNA:   3'- -CUCGCAGU-----CCGGGCuUAGGAGCuUGc -5'
23925 3' -55.6 NC_005262.1 + 42277 0.67 0.698381
Target:  5'- cGAGCGgcaCGGGCaCCGGcgacguGUUCUCGcGCGu -3'
miRNA:   3'- -CUCGCa--GUCCG-GGCU------UAGGAGCuUGC- -5'
23925 3' -55.6 NC_005262.1 + 17331 0.68 0.633756
Target:  5'- -uGCGUCGuGGCCggcgcggcauuCGggUCCggcgCGGGCGg -3'
miRNA:   3'- cuCGCAGU-CCGG-----------GCuuAGGa---GCUUGC- -5'
23925 3' -55.6 NC_005262.1 + 4589 0.68 0.622923
Target:  5'- aGGCGUguGGCCCGA--CUUCGcaaGGCGc -3'
miRNA:   3'- cUCGCAguCCGGGCUuaGGAGC---UUGC- -5'
23925 3' -55.6 NC_005262.1 + 26123 0.69 0.579758
Target:  5'- cGAGCuG-CAcGCCCG-AUCCUUGAACGu -3'
miRNA:   3'- -CUCG-CaGUcCGGGCuUAGGAGCUUGC- -5'
23925 3' -55.6 NC_005262.1 + 35372 0.7 0.506102
Target:  5'- cGGCG-C-GGCCCGAuucgaCCUCGAGCa -3'
miRNA:   3'- cUCGCaGuCCGGGCUua---GGAGCUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.