Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23925 | 3' | -55.6 | NC_005262.1 | + | 39596 | 0.66 | 0.76075 |
Target: 5'- cAGCGUCGcGGCUgccg-CCUCGGGCGu -3' miRNA: 3'- cUCGCAGU-CCGGgcuuaGGAGCUUGC- -5' |
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23925 | 3' | -55.6 | NC_005262.1 | + | 9812 | 0.66 | 0.719536 |
Target: 5'- aGGCGUCguAGGCaucgCCGAGcgUCUUGAGCGa -3' miRNA: 3'- cUCGCAG--UCCG----GGCUUa-GGAGCUUGC- -5' |
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23925 | 3' | -55.6 | NC_005262.1 | + | 13221 | 0.66 | 0.729993 |
Target: 5'- uGAGCGgcagCGGGCUCGGG-CUgcggUUGAACGg -3' miRNA: 3'- -CUCGCa---GUCCGGGCUUaGG----AGCUUGC- -5' |
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23925 | 3' | -55.6 | NC_005262.1 | + | 11634 | 0.66 | 0.740355 |
Target: 5'- cGGCGUCgAGGCCgGggUaguugcgcgccgCCUCccaGAACGa -3' miRNA: 3'- cUCGCAG-UCCGGgCuuA------------GGAG---CUUGC- -5' |
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23925 | 3' | -55.6 | NC_005262.1 | + | 28967 | 0.66 | 0.740355 |
Target: 5'- cGAGgaaGUCGGGgagCUGAucggcAUCCUCGGACGg -3' miRNA: 3'- -CUCg--CAGUCCg--GGCU-----UAGGAGCUUGC- -5' |
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23925 | 3' | -55.6 | NC_005262.1 | + | 35069 | 0.66 | 0.76075 |
Target: 5'- cGGCGUcCGGGCgCGcggCCUCGcGGCGg -3' miRNA: 3'- cUCGCA-GUCCGgGCuuaGGAGC-UUGC- -5' |
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23925 | 3' | -55.6 | NC_005262.1 | + | 29580 | 0.66 | 0.770762 |
Target: 5'- cGAGCGUgucGCCCGAAgCCgcgaucgCGGGCGg -3' miRNA: 3'- -CUCGCAgucCGGGCUUaGGa------GCUUGC- -5' |
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23925 | 3' | -55.6 | NC_005262.1 | + | 17841 | 0.66 | 0.770762 |
Target: 5'- cGAGCGggaaCAGGUacUCGAugccGUCCUCGA-CGu -3' miRNA: 3'- -CUCGCa---GUCCG--GGCU----UAGGAGCUuGC- -5' |
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23925 | 3' | -55.6 | NC_005262.1 | + | 3790 | 0.66 | 0.76075 |
Target: 5'- gGAGCcgGUCGGaaCCCGGccAUCCUCG-ACGg -3' miRNA: 3'- -CUCG--CAGUCc-GGGCU--UAGGAGCuUGC- -5' |
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23925 | 3' | -55.6 | NC_005262.1 | + | 18076 | 0.66 | 0.719536 |
Target: 5'- -cGCGcUCGaacuGGCUCGAAUgCCUCGAAgCGg -3' miRNA: 3'- cuCGC-AGU----CCGGGCUUA-GGAGCUU-GC- -5' |
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23925 | 3' | -55.6 | NC_005262.1 | + | 3892 | 0.66 | 0.740355 |
Target: 5'- aAGCGUCAGGCuuGca---UCGAGCu -3' miRNA: 3'- cUCGCAGUCCGggCuuaggAGCUUGc -5' |
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23925 | 3' | -55.6 | NC_005262.1 | + | 6075 | 0.66 | 0.759742 |
Target: 5'- -uGCGUCAGGCCgCGGccuucUUCUCGGugauccgcacguuGCGg -3' miRNA: 3'- cuCGCAGUCCGG-GCUu----AGGAGCU-------------UGC- -5' |
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23925 | 3' | -55.6 | NC_005262.1 | + | 35713 | 0.66 | 0.759742 |
Target: 5'- cGGCGUCGgcgggacGGCCaCGcuGAUCCUCGcAUGg -3' miRNA: 3'- cUCGCAGU-------CCGG-GC--UUAGGAGCuUGC- -5' |
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23925 | 3' | -55.6 | NC_005262.1 | + | 42277 | 0.67 | 0.698381 |
Target: 5'- cGAGCGgcaCGGGCaCCGGcgacguGUUCUCGcGCGu -3' miRNA: 3'- -CUCGCa--GUCCG-GGCU------UAGGAGCuUGC- -5' |
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23925 | 3' | -55.6 | NC_005262.1 | + | 33177 | 0.67 | 0.698381 |
Target: 5'- cGAGCGUCGgcggcGGCUCG-AUCUUCGcGCc -3' miRNA: 3'- -CUCGCAGU-----CCGGGCuUAGGAGCuUGc -5' |
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23925 | 3' | -55.6 | NC_005262.1 | + | 20495 | 0.67 | 0.698381 |
Target: 5'- cGGGCGUCAucaGCaCCGAGcCCUCGAuCa -3' miRNA: 3'- -CUCGCAGUc--CG-GGCUUaGGAGCUuGc -5' |
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23925 | 3' | -55.6 | NC_005262.1 | + | 17331 | 0.68 | 0.633756 |
Target: 5'- -uGCGUCGuGGCCggcgcggcauuCGggUCCggcgCGGGCGg -3' miRNA: 3'- cuCGCAGU-CCGG-----------GCuuAGGa---GCUUGC- -5' |
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23925 | 3' | -55.6 | NC_005262.1 | + | 4589 | 0.68 | 0.622923 |
Target: 5'- aGGCGUguGGCCCGA--CUUCGcaaGGCGc -3' miRNA: 3'- cUCGCAguCCGGGCUuaGGAGC---UUGC- -5' |
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23925 | 3' | -55.6 | NC_005262.1 | + | 26123 | 0.69 | 0.579758 |
Target: 5'- cGAGCuG-CAcGCCCG-AUCCUUGAACGu -3' miRNA: 3'- -CUCG-CaGUcCGGGCuUAGGAGCUUGC- -5' |
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23925 | 3' | -55.6 | NC_005262.1 | + | 35372 | 0.7 | 0.506102 |
Target: 5'- cGGCG-C-GGCCCGAuucgaCCUCGAGCa -3' miRNA: 3'- cUCGCaGuCCGGGCUua---GGAGCUUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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