miRNA: 3'- -CUCGCAGuCCG----------GGCUUaGGAGCUUGC- -5'
miRNA: 3'- cUCGCaGUCCGGGCUU-----AGGAGCU---UGC- -5'
miRNA: 3'- cUCGCAGUCCGgGCUUaGG-AGCUUGc -5'
miRNA: 3'- -CUCGCAGUCCGGGCUUAGGAGCUUGC- -5'
Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 23925 | 3' | -55.6 | NC_005262.1 | + | 14015 | 0.72 | 0.408725 |
|
Target: 5'- gGGGCGUCcGGCgcggcagcggCCGGAgCCUCGGGCGc -3' miRNA: 3'- -CUCGCAGuCCG----------GGCUUaGGAGCUUGC- -5' |
|||||||
| 23925 | 3' | -55.6 | NC_005262.1 | + | 16099 | 0.72 | 0.390684 |
|
Target: 5'- cGGCG-CGGGCCUGAAggacuUCCUCGGcgcGCGc -3' miRNA: 3'- cUCGCaGUCCGGGCUU-----AGGAGCU---UGC- -5' |
|||||||
| 23925 | 3' | -55.6 | NC_005262.1 | + | 8884 | 0.74 | 0.308601 |
|
Target: 5'- cAGCGUCAGGUgCGAG-CCgUCGAACu -3' miRNA: 3'- cUCGCAGUCCGgGCUUaGG-AGCUUGc -5' |
|||||||
| 23925 | 3' | -55.6 | NC_005262.1 | + | 30309 | 1.08 | 0.00137 |
|
Target: 5'- cGAGCGUCAGGCCCGAAUCCUCGAACGc -3' miRNA: 3'- -CUCGCAGUCCGGGCUUAGGAGCUUGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home